Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2147 CTGGCCATCGTGCCGGTGACGACCTCCTCCGATGTCCGATCTGACACCAGCTCTACTCCTCGGAAGCGGAGATTGAGATCTGATGGGCCACCGACGTTGGAGAGCCCGATCTCCTCGCCGGCAAAACGGAAATCGCCTCGCCGATGTAGCAGTGCCAGCCCAAATTGTGCTGTAACTGGGAATGAGATGGTTCAGATTGGTACCGATGAAGAAGTCAAATCGCATAAATTGCCAGCGAAGCCCTTGCAGGATAGTTTTGCTGCTAAACCTAAATGGAATCCCAAAGATGGTGAGCAAATAAGGGTGGCAAAGGAGGCATTGCATGTGTCCACTGCGCCGCCTTCAGTTGTGTGCCGAGAAGATGAGCAGAATATGGTTTTTGAGTTCTGCAAGTCATGCATTGAGCATGAGAAGGCTGGGAGTCTCTATATATGTGGGTGTCCTGGCACTGGAAAATCATTATCCATGGAGAAGGTGAAAGAGCTTTTAGTCAATTGGACTACACAGGCAGGTCTCATGCAGCCTGATGTCCTATCCTTGAACTGTACTTCTCTTGCAAATACGTCGGACATTTTCAGCAAGATACTTGGGTTAAATCAATCGCGGGGAAAAAAGATTTCATCCACACCCTTACAACAACTTCAGAACATGTATTCTCAAAAGTTGTCTAGCAAGAAGATGATATTGATAGTAGCTGATGAATTAGATTATCTAATTACCAAAGACAGGGCTGTGCTTCACGATCTTTTCATGCTCACCACTTTCCCATTTTCTAGATGTATATTAATAGGGGTAGCAAATGCAATTGACCTTGCTGATCGTTTTCTTCCAAggttaaaatcattaaattGCAAGCCTATCATTGTGACTTTTCGAGCGTACTCCAAAGATCAGATCCTCAAGATTCTGCAACAAAGGCTTAATGAACTTCCTTACACTGTCTTCCAACATCAAGCACTAGAGCTCTGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGGAAAGCTCTTTGTATTTGCAGGAGTGCAATAGAGATGCTGGAGGCAGAAATTAGAGAATCTACTGGCGTTTTAGAAATTTCATCAGAAGAGAAAGCATCCCCTGAACAGAAGTTAGCTGCTCCTGAATGTACAAAAAAACAAGAATTAGATGTTGTAAGAATTGATCATATGGCTCTTGCCTTGTCAAAGACATATAGATCGCCTGTGGTGGATACAATACAATCTCTACCACATCATCAACAGATCATACTTTGTTCTTCCATGAAACATTTCCGAGGAACAAAGAAAGATACAATCCTTGGGGAGTTGTATAAATCATACACGGACATTTGTAAATCATCACTAATTCCACCAGCTGGAATCCTGGAGTTTTCGAATATGTGCAGAGTTCTGAATGACCAGGGACTTATTAAACTAGGACCATCGCGAGAGGACAAATTGAAAAGGGTGACACTGAAAATAGATGAAGCTGATATTACCTTTGCATTGCAGGGAATCCGTTTTTTCCGAAACTGTCTTCAATGA 1530 0.4294 LAIVPVTTSSDVRSDTSSTPRKRRLRSDGPPTLESPISSPAKRKSPRRCSSASPNCAVTGNEMVQIGTDEEVKSHKLPAKPLQDSFAAKPKWNPKDGEQIRVAKEALHVSTAPPSVVCREDEQNMVFEFCKSCIEHEKAGSLYICGCPGTGKSLSMEKVKELLVNWTTQAGLMQPDVLSLNCTSLANTSDIFSKILGLNQSRGKKISSTPLQQLQNMYSQKLSSKKMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLKSLNCKPIIVTFRAYSKDQILKILQQRLNELPYTVFQHQALELCARKVAAASGDMRKALCICRSAIEMLEAEIRESTGVLEISSEEKASPEQKLAAPECTKKQELDVVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGTKKDTILGELYKSYTDICKSSLIPPAGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTLKIDEADITFALQGIRFFRNCLQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2147 509 Gene3D - 96 283 IPR027417 -
Sto9g2147 509 CDD AAA 122 283 - -
Sto9g2147 509 CDD Cdc6_C 412 494 IPR015163 -
Sto9g2147 509 Gene3D - 284 407 - -
Sto9g2147 509 Pfam AAA domain 137 254 IPR003593 -
Sto9g2147 509 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 9 508 - -
Sto9g2147 509 Pfam AAA lid domain 315 351 IPR041083 -
Sto9g2147 509 Pfam CDC6, C terminal winged helix domain 419 497 IPR015163 -
Sto9g2147 509 PIRSF Cdc6 5 509 IPR016314 GO:0006270|GO:0051301
Sto9g2147 509 Gene3D - 408 498 IPR036388 -
Sto9g2147 509 SUPERFAMILY "Winged helix" DNA-binding domain 404 507 IPR036390 -
Sto9g2147 509 SMART Cdc6_C_2 419 498 IPR015163 -
Sto9g2147 509 MobiDBLite consensus disorder prediction 1 54 - -
Sto9g2147 509 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 9 508 - -
Sto9g2147 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2147 Sto-Chr9 25186292 25191223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2147 12 508 Core DNA Replication Machinery Family AT2G29680 60.861 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2147 K02213 - gmx:100791200 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2147 9 25186292 25191223 Sto9g2147 9 25186292 25191223 ECH