Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2141 ATGGCAACCATTGCTACTTTCTTGACCAAGTTCCTCTCTCTTTTCGTCCTCCTTGTTCACCTGGGttgcttcatcttctccacCGCCGGAGAAGAAGCACGATCGCACGATTCCCACCACAACCCACTCTCCAAGccttcttctccttcccatCCTAAGTTCAAAACCCGCAAGGCCATTTCGTCTTCTTGGACTTTCATCAAACACCTTTTCTCCACTAAATCTTGCAAAACCATGCAATCCTCCACCACAGCCACCACCGTCTCCGCCGCCGCATTGCCCACCTTAACCTCCGCCAGATCCTCCCAGCAGTCACTAGTCTCTCTGGCACAACCCGAATCGCATTCTCTCGATCCGCCCCCGAGGAAGAAACCAACCGGGTCGGGGCTAGAATCCGACATCGCCGCCGACAACAACCACTTCTTCCCCCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCCAATGCCCTCGAACAGCACCAATCGCTCAAGCACGCCGTGTCGGAGCTCCTCGAGAGCGACGCGGGTCACAACATAGTTCGGATCATATTCAAGTCGGGTTGGACGAACACCCAGAAAAGCCCGCGGATCACGCGGATCCTGAAGATCCACAATAGCCCCAAGATCCTCGCGAAATTCGAGGAGTACCGAGAGAGCGTGAAGTCCAAAGCGGCGCGAAACGGCGCCGTAAAGAAGCGCGACGAGAGGTGCATCGCCGACGGAAACGAGCTCATGAGGTTCCACTGCTCCACGTTCTTATGCGAGTTGGGACTCAACGGGAATTCCGGGATTTGTGGGCAGCAATATTGTAATATCTGCGGGATCATCAAGTCGGGATTCTCACCCAAGTTGGACGGAATCTCCACGCTATCTACTAGCTGGAGGGCACACGTGGCGATCCCGGAGGAGGTGGAGGAGGAGTTCAAGTTCATGAACGTGAAGCGCGCCATGCTGGTCTGTCGGGTCATTGCGGGTCGGATCGGGTCGGACTCCGACGAGGCCGAGAAGGAGGATGGGGGTTTTGATTCGGTGATGGCGCGAGGGGGGACGGGAGTTTACACCCGGTTGGACGAAGAGGAGCTATTGGTGTTTAATCCTCGAGCTGTGCTGCCGTGCTTTGTGATTGTGTATAGTGTGTGA 1161 0.5452 MATIATFLTKFLSLFVLLVHLGCFIFSTAGEEARSHDSHHNPLSKPSSPSHPKFKTRKAISSSWTFIKHLFSTKSCKTMQSSTTATTVSAAALPTLTSARSSQQSLVSLAQPESHSLDPPPRKKPTGSGLESDIAADNNHFFPLRNDIFPCTACGEIFQKPNALEQHQSLKHAVSELLESDAGHNIVRIIFKSGWTNTQKSPRITRILKIHNSPKILAKFEEYRESVKSKAARNGAVKKRDERCIADGNELMRFHCSTFLCELGLNGNSGICGQQYCNICGIIKSGFSPKLDGISTLSTSWRAHVAIPEEVEEEFKFMNVKRAMLVCRVIAGRIGSDSDEAEKEDGGFDSVMARGGTGVYTRLDEEELLVFNPRAVLPCFVIVYSV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2141 386 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 385 - -
Sto9g2141 386 Gene3D - 173 385 - -
Sto9g2141 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 177 IPR013087 -
Sto9g2141 386 MobiDBLite consensus disorder prediction 104 132 - -
Sto9g2141 386 MobiDBLite consensus disorder prediction 34 55 - -
Sto9g2141 386 SUPERFAMILY ADP-ribosylation 174 385 - -
Sto9g2141 386 ProSitePatterns Zinc finger C2H2 type domain signature. 151 172 IPR013087 -
Sto9g2141 386 PANTHER NUCLEIC ACID BINDING PROTEIN 3 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2141 Sto-Chr9 25149994 25151226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2141 64 386 C2H2 Transcription Factor Family AT2G29660 56.456 6.06e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto9g2141 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2141 - - gmx:100785244 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2141 9 25149994 25151226 Sto9g2141 9 25149994 25151226 ECH