Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2118 TTGCTCCGTGGAGATCGAGGACCTTCGAGTGAGTGTGAGAGATCCTGCAATAGCCAACACCATCTTTTGAAACACACGTTTCGTCTCCCTTCTGGTGCTATGATGTCGTATTCCAGAAGATCCAGGTATTCTCCTTCACCATCTCCGCCGTACAAGCATTATGATAGGTCTGTCTCTAGGTCTCTGTCAAGGTCGAGGTCTAGAAGCCTGTCAAGGAGCCCATCAAGGGATGCAGAAAATCCTGGTAACAATTTGTATGTGACAGGCTTGTCTCCTCGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAACCGAGGGAAAAGTGATTGATGTTCATCTAGTTGTTGATCCATGGACAAGAGAATCGAGAGGATTTGGATTTGTGACAATGGGAACAGTTGATGAAGCTGACCGATGTGTAAAGTATCTGAATCGCTCTGTGATTGAAGGGCGTGTGATAACTGTAGAGAAGGCTAGAAGACGACGGGGTCGAACTCCTACACCTGGGAGGTATCTTGGGCTGAGGACTATTCGTGGACGTCGCCGCTCTCCAAGCCACTCTCCTTGTCGCTCTCCTACCTATTCTCCATACAGGAGAAGCTATAGTCGTTCACCATTTTCAGATCGTAGTAGGAGTCGTTCCTATTCTCCTTACAACAGTCGGAGGAGGTCCTATTCTCCATACATTCGAAGGAGGTCCTACTCTCGCAGAGATTATTCCCCTTACCATAGTCGTCGCAGAGATTATTCTCCTTATGATCGCCACAGAGATTATTCTCCCTATGACCCTCGCAGGGCAGACTCTCGGTCTCCTTCCCCTTACAGCAGGTCTCCTGTCAGTAGGCGTGACAGATCATACTCCCCTTATGATTCACCTGATGACCGATACTATAGAAGGCATCGCTATAGGTCCATTTCTCGAAGTGTTTCACCAAGGTCAAGGAGAAGTTCAAGGAGGAGGTATTCCCCCAGTGTGTCTCCTGTGCGGAGAAGAAGGAGCTCAAGGAGGAGCTACTCTCCAAGTGTTTCTCCTAGAACAAGGAGGAGTTCTCGAAGGAGCTATTCTCGCAGCATCTCTCCAAGACCTAGAAGTAGTAAAAGGAGTGGTGGTTCTTCAAAACGTGGGCATACACCTCTTAGTGATAGAAGCTACTCAAAAAGTCCAAGTCGAAGTGTGAGTGCAAGTTCAAGGTCAGTATCAAGGTCTGTTACTCCTAGATCTGCGTCTTCTTAA 1236 0.4782 LLRGDRGPSSECERSCNSQHHLLKHTFRLPSGAMMSYSRRSRYSPSPSPPYKHYDRSVSRSLSRSRSRSLSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMGTVDEADRCVKYLNRSVIEGRVITVEKARRRRGRTPTPGRYLGLRTIRGRRRSPSHSPCRSPTYSPYRRSYSRSPFSDRSRSRSYSPYNSRRRSYSPYIRRRSYSRRDYSPYHSRRRDYSPYDRHRDYSPYDPRRADSRSPSPYSRSPVSRRDRSYSPYDSPDDRYYRRHRYRSISRSVSPRSRRSSRRRYSPSVSPVRRRRSSRRSYSPSVSPRTRRSSRRSYSRSISPRPRSSKRSGGSSKRGHTPLSDRSYSKSPSRSVSASSRSVSRSVTPRSASS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2118 411 MobiDBLite consensus disorder prediction 187 224 - -
Sto9g2118 411 SUPERFAMILY RNA-binding domain, RBD 71 186 IPR035979 GO:0003676
Sto9g2118 411 Gene3D - 36 167 IPR012677 -
Sto9g2118 411 PANTHER TRANSFORMER-2-RELATED 42 311 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 356 411 - -
Sto9g2118 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 154 IPR000504 GO:0003723
Sto9g2118 411 MobiDBLite consensus disorder prediction 287 301 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 63 89 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 271 285 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 302 337 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 160 411 - -
Sto9g2118 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Sto9g2118 411 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 42 311 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 232 265 - -
Sto9g2118 411 MobiDBLite consensus disorder prediction 38 89 - -
Sto9g2118 411 SMART rrm1_1 84 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2118 Sto-Chr9 24994409 24996981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2118 84 230 Eukaryotic Initiation Factors Gene Family AT2G36660 28.387 2.43e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2118 - - gmx:100808038 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2118 9 24994409 24996981 Sto9g2118 9 24994409 24996981 ECH