Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2098 ATGTCACAAGCGATGGCTGGGGCAAATGCATCTAATTCATCTTCACTAGAATGTCCTAATGGTGATTCTGAATCCAATGATGGCCAATCTTTGTCCAATAGTGAGTTgaatgaggaagaagatgatgccACGAAAGAATCACCAGCTACAGCTCCTAATCAATCAGGAAATTATGTTCAAGAACACCAAGGAATGCAGCATGCTTCATCATCTGCACCTTCCATGCGAGATGAATGCCTTACACAGACTCCACAGCTTGAACTTGTTGGTCATTCAATTGCATGCGCTTCAAATCCATATCAGGATCCATATTACGGGGGAATGATGGCAGCTTATGGACCACATCAGCTGGGATACCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCGCTAGAGATGGCACAAGAGCCTGTTTATGTGAATGCAAAACAATACCAGGCAATTCTCAGGCGTAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGTTAATAAAAGTTAGAAAGGTTCCTCTTCTGTGCTTTGCTAACATCTGTTCTGCACAGCCATATCTTCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCGAGGGGTACTGGAGGACGTTTTGCAAAGAAGAATGATGCTGCTGAGGCATCGAACCACTCGAGCAAGGAAAGGGATATGGGATCTGGTCCAGTTCTGTCGTCACAATCGATCAGTTCTTCTGGTTCTGAACCTTTACCCTCTGAGTCTGCCGAAACATGGAACTCTCCCAATGTGCAACAAGATGCTAGAGGATATAAAATTTCTGACAGATACGATGCACACAACTATGCAAATAGTAGTGGCTCTTACAACAACCATAGTGGCTTGCAATCTTCTACTTATCATCTGCACTCTGGCGAAAGAGTGGAGGAGGGGGACTGTTCAGGGCAACAACGGGGAAGCATCTCGTCTGAGCACACTTCACAGAGGCGTCTTGCAATTCAGTAA 987 0.4458 MSQAMAGANASNSSSLECPNGDSESNDGQSLSNSELNEEEDDATKESPATAPNQSGNYVQEHQGMQHASSSAPSMRDECLTQTPQLELVGHSIACASNPYQDPYYGGMMAAYGPHQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQAILRRRQARAKAELERKLIKVRKVPLLCFANICSAQPYLHESRHQHAMRRARGTGGRFAKKNDAAEASNHSSKERDMGSGPVLSSQSISSSGSEPLPSESAETWNSPNVQQDARGYKISDRYDAHNYANSSGSYNNHSGLQSSTYHLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2098 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 139 207 IPR001289 GO:0003700|GO:0006355
Sto9g2098 328 MobiDBLite consensus disorder prediction 1 79 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 1 33 - -
Sto9g2098 328 Gene3D - 137 212 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 223 259 - -
Sto9g2098 328 ProSiteProfiles NF-YA/HAP2 family profile. 137 210 IPR001289 GO:0003700|GO:0006355
Sto9g2098 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 319 IPR001289 GO:0003700|GO:0006355
Sto9g2098 328 MobiDBLite consensus disorder prediction 278 296 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 278 328 - -
Sto9g2098 328 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 7 319 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 205 222 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 47 79 - -
Sto9g2098 328 MobiDBLite consensus disorder prediction 309 328 - -
Sto9g2098 328 ProSitePatterns NF-YA/HAP2 subunit signature. 142 162 IPR018362 GO:0003677|GO:0016602
Sto9g2098 328 MobiDBLite consensus disorder prediction 190 259 - -
Sto9g2098 328 SMART cbf3 136 210 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2098 Sto-Chr9 24846206 24848960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2098 1 255 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.713 4.37e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto9g2098 CBFB_NFYA 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2098 K08064 - gmx:100808378 453.751