Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2092 ATGGGCCGCATTCCGTGCTGTGAGAAGGACAACGTCAAGAGGGGGCAGTGGACACCTGAAGAAGATAATAAGCTATCATCCTACATTGCTCAACATGGAACCAGAAACTGGCGCCTTATCCCTAAGAATGCTGGCCTCCAACGATGTGGAAAGAGCTGCAGACTCAGATGGACTAATTACCTTCGTCCTGATCTCAAGCATGGTCAGTTCTCTGATGCAGAAGAACAAACCATTGTCAAGCTTCACTCAGTTTTTGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCGGGGCGCACTGACAATGACGTAAAAAACCATTGGAACACCAAGCTGAAGAAGAAACTTTCAGGTATGGGTATTGACCCTGTTACCCACAAGCCATTCTCCCATCTAATGGCTGAAATTGCAACAACATTGGCACCCCCACAGGCAGCTCACCTTGcagaagcagcacttggctgctTCAAGGATGAGGTGCTCCACCTTCTTACTAAGAAGAAGATTAACTTCCAAGCCCATCACCCCAATAATTTTAACTCTTTCATTGACTATAAACCTGATGAAAAGGATGACACTGTTGAGAAGATTAAGTTTGGCTTATCGAAGGCTATGCAAGAACCTGAAGTGATACCCTTAAGTAAACCTTGGGACTGCACTGCAACTACATCTGCTAGTTTTGCAGGCACTTGCAGTGTATTTCCTACAGTGTCTGGGTTTCAGTTTAGTCCAGTGTCCTTTGCCAATGAAGGGGATGGATCACTATGGAGCCAAAGTGTATGTACCGGAAGCACATGCACTGCCATGGATCAGCAAGGCCAGTTACATGAAAAACTTGAGGAAGAAAATGGAGATGATTCTCATGCtgcaaaagaaataagaaatggATCCAATATATTCAACTCAGATTGTGTTTTGTGGGATTTACCATCAGAAGATCTAATTAATCCCATGGTATAA 960 0.4271 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKKINFQAHHPNNFNSFIDYKPDEKDDTVEKIKFGLSKAMQEPEVIPLSKPWDCTATTSASFAGTCSVFPTVSGFQFSPVSFANEGDGSLWSQSVCTGSTCTAMDQQGQLHEKLEEENGDDSHAAKEIRNGSNIFNSDCVLWDLPSEDLINPMV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2092 319 PANTHER TRANSCRIPTION FACTOR MYB80 1 319 - -
Sto9g2092 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto9g2092 319 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Sto9g2092 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto9g2092 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sto9g2092 319 Gene3D - 69 128 - -
Sto9g2092 319 CDD SANT 17 61 IPR001005 -
Sto9g2092 319 CDD SANT 70 112 IPR001005 -
Sto9g2092 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto9g2092 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto9g2092 319 SMART sant 66 114 IPR001005 -
Sto9g2092 319 SMART sant 13 63 IPR001005 -
Sto9g2092 319 PANTHER F14D16.11-RELATED 1 319 - -
Sto9g2092 319 Gene3D - 14 66 - -
Sto9g2092 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2092 Sto-Chr9 24799117 24800724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2092 1 319 MYB Transcription Factor Family AT5G56110 58.282 2.80e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g2092 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2092 K09422 - gmx:100800764 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2092 9 24799117 24800724 Sto9g2092 9 24799117 24800724 ECH