Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2078 ATGAGCGATTCTGCGTACAGAGTCGAAACCACTTCTCGCCTCGCTCAATGGAGAATCGAGAACCTTGCCTCCTGCACTTACCGTAAATCTGATCCTTTCAAGATCGGCAAGTGGAATTGGCATTTGGCCGTGGAGAAGAACCGGGTTTTGTTCGTAAAATTGTACCCAGAAATATCCAATCTAACCAGAGACAATCCCCCGATTGCATCTTTCATCATTCGGGTCGTTAGTTCAGTTGGCGATCGCAAGGCCTTGGTCCATCCAGGAATAAAAGACAGATTGATCAAGAGCAACGAAGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAGCCTTGCTCCATCTGGGCAGAAGGGCATACACAGAAGAGGTCAAATGCAACAGCTCTTGAAGCTCTTGGGCGAATGCTAACAGAAGGAATTCACACAGACATAATGATCAATGCATCTGATGGAAGCATTGGAGCTCATCGTGCTGTACTTGCTGCTCGGTCCCCAGTCTTTCGCAGCATGTTCTCGCATAACCTTAAGGAGAAGGAGCTATCCACCATAAACATCTCAGACATGTCAATTGATGCTTGCCAAGCATTTCTCAATTACCTTTATGGGAACATCAAACATGAAGAATTTCTCACACACAGGCTTGTCCTTCTGCATGCAGCTGATAAATATGACATATCTGACCTGAAGGAGGCATGCCATGACAGCCTTCTTGAAGATATTGATACCAAAAATGTTCTTGAGAGGCTCCAAAATGCATCCCTATACCAATTACCTAAACTGAAGAGTAGTTGCCTGCGCTATCTTGTGAAATTCGGTAAAATATTTGACATTCGGGATGATTTCAATGCCTTCTTGCAATGTGCAGACAGGGATCTGATTTCTGAAGTCTTCCATGAAGTTCTCAGTGCCTGGAAAGGGTTCTGA 987 0.4458 MSDSAYRVETTSRLAQWRIENLASCTYRKSDPFKIGKWNWHLAVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSVGDRKALVHPGIKDRLIKSNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAEGHTQKRSNATALEALGRMLTEGIHTDIMINASDGSIGAHRAVLAARSPVFRSMFSHNLKEKELSTINISDMSIDACQAFLNYLYGNIKHEEFLTHRLVLLHAADKYDISDLKEACHDSLLEDIDTKNVLERLQNASLYQLPKLKSSCLRYLVKFGKIFDIRDDFNAFLQCADRDLISEVFHEVLSAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2078 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Sto9g2078 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Sto9g2078 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Sto9g2078 328 Gene3D Potassium Channel Kv1.1; Chain A 137 291 IPR011333 -
Sto9g2078 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Sto9g2078 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Sto9g2078 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Sto9g2078 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2078 Sto-Chr9 24683621 24685330 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto9g2078 BTB 2.4e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2078 K10523 - gmx:100790186 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2078 9 24683621 24685330 Sto5g4314 5 51898881 51903355 CCT
Sto9g2078 9 24683621 24685330 Sto9g2078 9 24683621 24685330 ECH