Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2059 ATGAACTCCTCACAACAAGAAGACCAAACCAGGTCACCTCCTCGTAGTCCTCGAGCTTCCCTTCTAATCGGCATGGCCATGAGGATGTCCCGAGCGAGATGGTTCGTGTTCCTGAGGAGGGTGTTCCAGTACCAAAACGGGTCGAGATCGGATCTCGGGTCGAACCCGTTCAACACGAAGAagtggatgatgatggagtTGGTGGGTCTGATGGTTCAGATAACGGTGTCGTCAGTGACGCTGGCGACTTCGCAGAGGGAGAGACCAGTGTGGCCCATGAGGGTGTGGGTGGGTGGCTACGAAGTTGGGTGTGTGATGAGTTTGATGTTGCTGTATGGGCGGTATCGTCAGCTTTATATGACTCAACCGCAAGGAGACGCTCACGCTCATGGCGTTTCCGATGTGGAGCAACAGAGAGGGAGTGAAGATGCAAGgtacatttttTTGATGAGCAAATGCCAGAGTACACTAGAACTACTATTGGCCATATGGTTTGTGATGGGCAATGTGTGGGTTTTCGACTCTCGTCTTGGTTCTTACCAGAAAGCCCCAAAACTCCATATCCTCTGCTTCTCCCTCCTAGCTTGGAATGCCCTCTCCTACTCTTTCCCTTTCCTCTTGTTCCTCCTTCTCTGCTGcttcctccctcttctctcCACTCTCTTTGGCCTCAACTTCACCATGTCTCCCTCCCACAGAGCTGCTTCTCATCACCAAATCTCTCTCCTCCCTTCTTGGAGATACAAGCACCTTACTTCTAATAATGCTTCTCATCAATGCTGCATTTGCTTGGCTAAGtacaaagagaaagaagaagttaGGCAATTGCCTTGTTCACATATGTTTCACCAAAGATGTGTGGATCAATGGCTCAGAATTATATCTTGTTGTCCTCTCTGTAAACAAGGGTTAGATAGCTAG 921 0.4615 MNSSQQEDQTRSPPRSPRASLLIGMAMRMSRARWFVFLRRVFQYQNGSRSDLGSNPFNTKKWMMMELVGLMVQITVSSVTLATSQRERPVWPMRVWVGGYEVGCVMSLMLLYGRYRQLYMTQPQGDAHAHGVSDVEQQRGSEDARYIFLMSKCQSTLELLLAIWFVMGNVWVFDSRLGSYQKAPKLHILCFSLLAWNALSYSFPFLLFLLLCCFLPLLSTLFGLNFTMSPSHRAASHHQISLLPSWRYKHLTSNNASHQCCICLAKYKEKEEVRQLPCSHMFHQRCVDQWLRIISCCPLCKQGLDS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2059 306 Pfam Ring finger domain 259 301 IPR001841 -
Sto9g2059 306 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 305 - -
Sto9g2059 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 306 IPR013083 -
Sto9g2059 306 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 305 - -
Sto9g2059 306 SMART ring_2 260 300 IPR001841 -
Sto9g2059 306 CDD RING-H2_RNF111_like 260 301 - -
Sto9g2059 306 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Sto9g2059 306 SUPERFAMILY RING/U-box 254 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2059 Sto-Chr9 24537608 24541625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2059 3 304 C3H Transcription Factor Family AT4G26580 61.093 1.66e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2059 - - tcc:18593235 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2059 9 24537608 24541625 Sto9g2059 9 24537608 24541625 ECH