Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2000 TTGGCAGGAGAACAGATGGAATCAGATCTTGGTAAGCTCTTCATTGGGGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAacaggtcgtgctcgtggtttTGGTTTTGTTGTGTTCGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGAAAAGCACATAATTGATGGCCGCACAGTAGAGGCAAAGAAAGCCGTTCCCAGGGATGACCAACATGCTATAAATAGAAATTCTGGTAGTGTCCACGGGTCTCCTGGTCCTGGGCGCACGAAAAAGATTTTTGTTGGAGGTTTACCATCAAGTATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGTACAATTACGGATGTTGTAGTAATGTACGATCATAATACCCAGAGGCCAAGAGGCTTTGGCTTTATCACCTATGATTCAGAAGAAGCTGTGGACAGAGTTCTCTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTGAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCAGCCGCAGCCCGTTGTTAGGAAATAATTATGGTTTTAATAGGGCCAGTAACTACCTAAACAGTTATGCTCAGAGTTATAATATGAGCCCGGTTGGAGGCTATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACAAGTGGTAGAAGTGGATTTTCCCCATTTGGCAGCAGTGGTTATGGAATGGGATTGAATCTGGATGCAGGATTGAGCCCAGGCTATGGTGGAACTTCCAATTATGGGAGCAATCTAGGATATGGTCGGATGATTAGTCCATTCTACAATAGCAACTCAAGTAGATATACTACTCCTATAGGCTATAGTGGGGGTAATGGGAGAAGCGATTCTCTGATGAACTCAACTTCTCGAAATCTCTGGGGAAATGGTGGCCTGAACAATGCCAATAACCCAGGCAGCACTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATAAAAAATGGTGGCACAAATTGGGGCCAATCCATTCCAGCCCAGGGTGGAGTGGCTGGTTCTGGCTATACCACTGGGATTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGGTTAGGAGGTGGAGGGTATGGAAGAAATGGCAGTATAGGTGTAAATTCATCCTCTGCATTTACTGCATCAACTGGTGGTTATGAAGGATCCTATGGAGACTTGTACCACAATGGTTCAGTTTATAATGACTCAACTTGGCGTTCTGCTGCTTCTGACCTAGATGGCTCTGGCTCATTTGGTTATGGACTTGGTGGGATAGCCTCAGAGGACCCAGTAAAGAGTTCAGAGGGTTATATTGGAAACTACAATGTTACAAGCAGACAGCCTAATAGAGGTTAG 1440 0.4361 LAGEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMEKHIIDGRTVEAKKAVPRDDQHAINRNSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLLGNNYGFNRASNYLNSYAQSYNMSPVGGYGVRMDGRFSPLTSGRSGFSPFGSSGYGMGLNLDAGLSPGYGGTSNYGSNLGYGRMISPFYNSNSSRYTTPIGYSGGNGRSDSLMNSTSRNLWGNGGLNNANNPGSTGAYLGSGSGAFGVSIKNGGTNWGQSIPAQGGVAGSGYTTGINVYEGGDSSFGLGGGGYGRNGSIGVNSSSAFTASTGGYEGSYGDLYHNGSVYNDSTWRSAASDLDGSGSFGYGLGGIASEDPVKSSEGYIGNYNVTSRQPNRG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2000 479 MobiDBLite consensus disorder prediction 455 479 - -
Sto9g2000 479 MobiDBLite consensus disorder prediction 85 109 - -
Sto9g2000 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 6 479 - -
Sto9g2000 479 CDD RRM2_DAZAP1 109 188 IPR034131 GO:0003723
Sto9g2000 479 SMART rrm1_1 112 184 IPR000504 GO:0003723
Sto9g2000 479 SMART rrm1_1 12 83 IPR000504 GO:0003723
Sto9g2000 479 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Sto9g2000 479 MobiDBLite consensus disorder prediction 465 479 - -
Sto9g2000 479 SUPERFAMILY RNA-binding domain, RBD 110 198 IPR035979 GO:0003676
Sto9g2000 479 Gene3D - 110 190 IPR012677 -
Sto9g2000 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 171 IPR000504 GO:0003723
Sto9g2000 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 79 IPR000504 GO:0003723
Sto9g2000 479 CDD RRM1_hnRNPA_hnRNPD_like 13 83 - -
Sto9g2000 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Sto9g2000 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 6 479 - -
Sto9g2000 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 87 IPR000504 GO:0003723
Sto9g2000 479 Gene3D - 11 93 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2000 Sto-Chr9 24031871 24033598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2000 10 185 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 3.27e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2000 K14411 - gmx:100805131 783.482