Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1977 ATGTCATCTCAAGGCAAAGAAAAGGCTATACCCCGCTTCTTCAAGATAGTTCTTCCCAAAAGCCTTCAAGATGGAGAGCTTAGGATTCCAAGGAGTTTCGTGACAAAATATTGGAAGGGCTTATCAAATTCAAAGGCAATAGTAGTACTTAGGGTTCcagatggtggtggtgatgagTGGGAAGTGGAGTGGACAGAACGTGATGGTGATGTTTGGTTGAAGAATGGTTGGAAGAATTTTGCAGATTTCTATTCAATAGGTGATGGTCATTTCTTGGTGTTTAGGTATGAAGGAGGAAACAAGTTTGAGGTTATGGTATTTGGGCGTGATGGAATAAATGGAAGAAGATGCATGAGGAGCAGTTGGAATAAAGTGAATGTTGAATCATCattaaaagataatattatcaTTGGAAGTAGCAGCAGAGGCACAAAATCAGCACTAGAGAGAGCAAAGAAGTTCCACTCAGAGAAACCATTTTTCGTACGTCCAATGTACCCAACATATGTTCATTCTGGTTACATGGTAGTACCATGCGATTTCTCTGCAAGATATTTGGAGGGGATGGAAGGGAAAGCAAGTATTATGGTTAGTGATGATGAGGAGAAGAAGATGACAAGTTGGGAAGTGAATTTTAAGTACACATTGGGGAATAAACGAAGTGTGTTTACTGCTGGATGGGGTTTATTTGCTGAAGACAATGGTTTAAAAGAAGGCGATGTTTGTGTGTTTGAGTTGATTCATCATCATGCACCACCACAACAACTTTCCTTCCAAGTTGTTATTTTCAGATCAACCTAG 801 0.382 MSSQGKEKAIPRFFKIVLPKSLQDGELRIPRSFVTKYWKGLSNSKAIVVLRVPDGGGDEWEVEWTERDGDVWLKNGWKNFADFYSIGDGHFLVFRYEGGNKFEVMVFGRDGINGRRCMRSSWNKVNVESSLKDNIIIGSSSRGTKSALERAKKFHSEKPFFVRPMYPTYVHSGYMVVPCDFSARYLEGMEGKASIMVSDDEEKKMTSWEVNFKYTLGNKRSVFTAGWGLFAEDNGLKEGDVCVFELIHHHAPPQQLSFQVVIFRST 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1977 266 PANTHER B3 DOMAIN-CONTAINING 141 265 - -
Sto9g1977 266 PANTHER B3 DOMAIN-CONTAINING 3 111 - -
Sto9g1977 266 Gene3D - 5 112 IPR015300 -
Sto9g1977 266 SUPERFAMILY DNA-binding pseudobarrel domain 10 111 IPR015300 -
Sto9g1977 266 CDD B3_DNA 11 107 IPR003340 GO:0003677
Sto9g1977 266 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 141 265 - -
Sto9g1977 266 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 111 - -
Sto9g1977 266 Pfam B3 DNA binding domain 13 107 IPR003340 GO:0003677
Sto9g1977 266 Pfam B3 DNA binding domain 162 249 IPR003340 GO:0003677
Sto9g1977 266 Gene3D - 140 266 IPR015300 -
Sto9g1977 266 CDD B3_DNA 159 264 IPR003340 GO:0003677
Sto9g1977 266 ProSiteProfiles B3 DNA-binding domain profile. 160 266 IPR003340 GO:0003677
Sto9g1977 266 SUPERFAMILY DNA-binding pseudobarrel domain 154 265 IPR015300 -
Sto9g1977 266 ProSiteProfiles B3 DNA-binding domain profile. 12 110 IPR003340 GO:0003677
Sto9g1977 266 SMART B3_2 161 266 IPR003340 GO:0003677
Sto9g1977 266 SMART B3_2 13 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1977 Sto-Chr9 23855649 23857105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1977 147 247 B3 DNA Binding Superfamily AT3G18990 36.275 5.12e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g1977 B3 3.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1977 - - mtr:MTR_5g044670 162.155