Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1975 ATGTCATCATCTCAAGGCCATCATGAAAAGGCTATCCACTTCTTCAAGATTATTCTTCCCAAAAGCATGCAAGATGGAGAGCtcAGGATTCCAAAGAGTTTCGTGAGGAAATATTGGAAGAAGGGGCTATCAAAATCAAAGGCAGTGGTATTTAGGGTTCCAAATGGTGCTAAATGGGAAGTAGAATGGATAGAACGTGATGGAGATATTTGGTTGAGGAATGGTTGGGAAAATTTTGCCAATTTTTATTCAATAGGTGATGGTCATTTCTTGGTGTTTAGGTATGAAGGAGGAAACAAGTTTGGGGTTATGGTATTTGGTATGAGTGGTTTAGAAATAGAGTATCCTCCCAAGGGTCGTGTGAGTGTGAGatccaaaaatattattattagtgatgaagatgatgatgttccTGAAGAGGTTAAACTCGAACAGaaaagtgatgatgatgatgatgatgatgataataagatTAGGAGTCATCAACCTCCTAAGAAGATGAAAACCAATCACTCTAATGGAACTAATACTAACCCCACAAAAACTAGAGGGAGTGATGGAGTAATTGAAAGATGCATGATATCAAAAATGGAGGGCAGATCAGCAATAGAGAGAGCAAAGAAATTCCGTTCAGAGAAGCCATTTTTCATATGTAAAATGCGCCCAACATATCTCCATCGTAATTTCTTGATAATACCACGGCATTTCTCTGTGACATATTTGGAGGGGATGGAAGGGAAAGCAAGAATTAGGGTTTGTGGAGAGACGATGAGAAGTTGGGAAGTGAAGTATAAGTACTTCATGTACAATAAACATTGTGTATTCACTTCTGGATGGGACTCATTTGCAAAGTACAATGATTTAGAAGAAGGAGATGCTTGTGTGTTTGAGATGATTCATCATCATGCACCTCCACAACAACTTTCATTCCAAGTTGTTATTTTCAGATCAACCTCTTCATCAAATCTTCAAACCCAATTTAATTAA 987 0.3546 MSSSQGHHEKAIHFFKIILPKSMQDGELRIPKSFVRKYWKKGLSKSKAVVFRVPNGAKWEVEWIERDGDIWLRNGWENFANFYSIGDGHFLVFRYEGGNKFGVMVFGMSGLEIEYPPKGRVSVRSKNIIISDEDDDVPEEVKLEQKSDDDDDDDDNKIRSHQPPKKMKTNHSNGTNTNPTKTRGSDGVIERCMISKMEGRSAIERAKKFRSEKPFFICKMRPTYLHRNFLIIPRHFSVTYLEGMEGKARIRVCGETMRSWEVKYKYFMYNKHCVFTSGWDSFAKYNDLEEGDACVFEMIHHHAPPQQLSFQVVIFRSTSSSNLQTQFN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1975 328 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 317 - -
Sto9g1975 328 MobiDBLite consensus disorder prediction 139 189 - -
Sto9g1975 328 Gene3D - 194 319 IPR015300 -
Sto9g1975 328 Gene3D - 6 110 IPR015300 -
Sto9g1975 328 CDD B3_DNA 214 316 IPR003340 GO:0003677
Sto9g1975 328 ProSiteProfiles B3 DNA-binding domain profile. 215 318 IPR003340 GO:0003677
Sto9g1975 328 ProSiteProfiles B3 DNA-binding domain profile. 13 109 IPR003340 GO:0003677
Sto9g1975 328 SUPERFAMILY DNA-binding pseudobarrel domain 211 316 IPR015300 -
Sto9g1975 328 CDD B3_DNA 13 106 IPR003340 GO:0003677
Sto9g1975 328 MobiDBLite consensus disorder prediction 167 184 - -
Sto9g1975 328 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Sto9g1975 328 SMART B3_2 14 109 IPR003340 GO:0003677
Sto9g1975 328 SMART B3_2 215 318 IPR003340 GO:0003677
Sto9g1975 328 PANTHER B3 DOMAIN-CONTAINING 4 317 - -
Sto9g1975 328 Pfam B3 DNA binding domain 215 301 IPR003340 GO:0003677
Sto9g1975 328 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1975 Sto-Chr9 23845725 23847620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1975 14 316 B3 DNA Binding Superfamily AT3G18990 28.571 9.33e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g1975 B3 2.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1975 - - qlo:115994073 186.422