Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1963 ATGGGTATCTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTtggaggaagaagagaaaGTATGAACTTGGAAGGCAACCCGCTAACACAAAGTTATCCAGCAACAAGACAGTTAGGAGGATTAGGGTTCGAGGTGGAAATGTCAAGTGGCGCGCATTGAGGCTTGATACAGGAAATTACTCCTGGGGAAGTGAAGCCGTGACTCGCAAAACAAGACTCCTTGATGTGGTTTACAATGCATCTAATAATGAACTGGTCCGAACTCAGACATTGGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCACCTTTTAAGCAGTGGTATCTCCAACATTATGGTGTTGACATTGGTCGCAAGAAGAAGAGTGCAACTTCTGCCAAGAAGGAGGGTGAGGAAGTTGAAGCTGTAACAGAAGAAGTAAAAAAGAGCAAGCATGTTTTGAGGAAGTTGGAGAAGCGGCAAGAGAACCGTACACTTGATCCACATATTGAAGAACAGTTTGGAGGTGGTCGTCTATTGGCTTGCATCTCATCCCGACCTGGTCAATGTGGTCGTGCCGATGGGTACATATTGGAGGGTAAAGAGCTGGAATTTTACATGAAGAAGCTTCAAAGGAAAAAGGGCAAGGGTGCTGCCTAA 657 0.4475 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSATSAKKEGEEVEAVTEEVKKSKHVLRKLEKRQENRTLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1963 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Sto9g1963 218 Gene3D - 162 215 - -
Sto9g1963 218 Gene3D - 32 161 - -
Sto9g1963 218 MobiDBLite consensus disorder prediction 1 41 - -
Sto9g1963 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Sto9g1963 218 MobiDBLite consensus disorder prediction 11 26 - -
Sto9g1963 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sto9g1963 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Sto9g1963 218 CDD Ribosomal_S8e_like 5 197 - -
Sto9g1963 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sto9g1963 218 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1963 Sto-Chr9 23765133 23767000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1963 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.922 3.84e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1963 K02995 - gmx:100527325 391.349