Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1952 ATGGAAGACTCCGCGATGGCCCCTGAGGTGAAGGACTCCGCTGAGGAGGCTAAATCGGAGGGCTTGCCGGTGAAGAGGCCGGTTGAGAATGGCGGAGGTGAGGAGTTGGTGAAGAAGCCTAAGGTTGAAGCTGCTGCATCTAGCGGAGAGTTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCCACGATGGCCACAATGCGAGGCGGGAGGAAGCCGGCGGATGTTGAGATTGAGCTGATGAAGGAGGCAAGGGCGAAGTTGGTGGAGTTGTGTCAAGGACTCGCTCCGAAGGATATTGTGGCAAGGGAAGCTATAGGGACTGTGATTGAGGATCTTGGGTTGAATGGGAAGATTAAAGACCAGAGATTAGGGTTTCAACCTCCCAAGATGTCTATAGCTGAAAGGTTTTCACTCACCAAGTTGAAGATTGAAGAATCAAAGAAGTTTTCAGCACGTTCTGCAACATATACGTCTCAGCCATTGCAAACAAGCATTAGCGGAACGGTTGAAAGCCGTGGGCAACCTCATGCTGTTCGAATGTTTCCAGCAGACAAATCAAGCCATGCAGTAATCTCTTCTGCAGGTACCCCAGCATCTATGCCTGTGACTCATGTTTCTGCAGGATCTTCTGCAGCTTTACAACATCAATCAACTAGCAATGAAGTAAGACCATCTATAGTTTCTAGTGGAGTGCCTAGCAGTCACTTGGGTAGAAATTCTTCTTCATCAGCATTGCCTAAAGCTGAACCACCACACTTCAAAGTTGATGGAGGATCAAATGCGTCTTCTTATGTGCTGCAAGTACAAGcaAATACTTCAGCAAACCAACCTTTAGTGAATGCTCCCACATGGTCAATACAGACTCAATCTGCCTCATTAGCTAAAAGTGCTCCAGAAGACAAGGTGCCTGGTCAGAATACTGTCAAGCCTGAAGGAACAGGTGACCAAAGTGTGTCTAGAGCAGCTCAGAATGTAGCAAGGGATCAGAGCTTTAGACCATTTGTAACACAAACCGGACCTGGAAATGTGTCTAGCATGCACCAGCCGATGCAGGGCATGAACATTGTTCAGCCTCCTGCACTTGCTAACAACCACATTGAAGTTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAGCATCCCACATGGACACCGCCATCAAGGGATTATATGAATAAGGCTTTGACTTGCCAGATGTGTGAGCTCACTGTTAGTGAAGTGGATAGTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAATGTCTACAGCCATCAATATTGAGAGGAATCCCTAGAGGTGAGTGGCACTGCATGAGATGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAGCTCTGGTGGAATTCAACCATCATTAGAGAAGAAAGCTGGAGTATTAGAACCAAAGGTTAGCTCACAGAAGTTAACGACTAATGGGAGCCCTGTTTCTACCGATGCCACTGGTATTAACAAAATTGCTAAGCTGCCATCTGATTCAAAGACCCCTGATACAAAAGAAACACAAGATAATACTTCCTCATCCAGCAGTAAACATATGGATGAGAAGCCTGACCCAAATATCTCGATAAAATCTTTTAGTGCAGCTAATAGTTCTTCTGTCATGCCAGTTGAAAGTTCTGCGGAACAAACAAGTTGTGAGGCATCTACCTGTAAAGACAGTGCCCCTGCTTCAGAACTGGCCACTCTTCCTAAATTATCTGATTCggttaaaattaacaattcgcaattttcacaaaatttacaGGTTGATCAGACAGTGCTACAAGATAATGCTGAAGTTCCATTAAATAAATGCATTGACAATAGTTTGAAAGATAATAGCAAAAAGGAATCTAATGGGGGGGAAAGTCTGACATATGATATGAAGTGCGATGAGCGATATGTTGCACTAGCAAATTCTGATCAAAATTCTGGAACTAATACTGAAGGTAGACAGCACACTGCATTATATTCAGATGGTTCACATGCTGTAGAATGGATCGGTGATCTTATAAAACTTGTGGATGAGAAAAAGTTTTACCAATCTTGCTGTGTTGATGGAGTAACATATAGGCTGCACGATCATATTCTTTTCCCATCCAGCCATGGAAAGTTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGGTTAAAGTGGGTACAGGTGACAAATTGCTACTTTCCTGGTGATTTACCTGGAAATATTGCCCATCCATGTATATCCGAAGTCAACGAGGTTTATGAATCTAACAGTGCTAGAACTGAAATGGCTGGCTCTATTCGAGATGGTTCTATGATGAACACAAAAAGTTATTTCAGCCAGTTACCAGTTGAGGCTGTCCTGGACATGGCTATTCCATGGTTTGTACTTTGTAGCCTTCAGACACTTCTCGAGTTCGAGTCTGTTTGA 2496 0.4339 MEDSAMAPEVKDSAEEAKSEGLPVKRPVENGGGEELVKKPKVEAAASSGELKRVAEIVLVLSTMATMRGGRKPADVEIELMKEARAKLVELCQGLAPKDIVAREAIGTVIEDLGLNGKIKDQRLGFQPPKMSIAERFSLTKLKIEESKKFSARSATYTSQPLQTSISGTVESRGQPHAVRMFPADKSSHAVISSAGTPASMPVTHVSAGSSAALQHQSTSNEVRPSIVSSGVPSSHLGRNSSSSALPKAEPPHFKVDGGSNASSYVLQVQANTSANQPLVNAPTWSIQTQSASLAKSAPEDKVPGQNTVKPEGTGDQSVSRAAQNVARDQSFRPFVTQTGPGNVSSMHQPMQGMNIVQPPALANNHIEVAKIVQKLLQPKLPEHPTWTPPSRDYMNKALTCQMCELTVSEVDSVLLCDACEKGFHLKCLQPSILRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSSNTPPKLPSSSGGIQPSLEKKAGVLEPKVSSQKLTTNGSPVSTDATGINKIAKLPSDSKTPDTKETQDNTSSSSSKHMDEKPDPNISIKSFSAANSSSVMPVESSAEQTSCEASTCKDSAPASELATLPKLSDSVKINNSQFSQNLQVDQTVLQDNAEVPLNKCIDNSLKDNSKKESNGGESLTYDMKCDERYVALANSDQNSGTNTEGRQHTALYSDGSHAVEWIGDLIKLVDEKKFYQSCCVDGVTYRLHDHILFPSSHGKLTPSKLQSMWEDSKTGLKWVQVTNCYFPGDLPGNIAHPCISEVNEVYESNSARTEMAGSIRDGSMMNTKSYFSQLPVEAVLDMAIPWFVLCSLQTLLEFESV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1952 831 MobiDBLite consensus disorder prediction 310 324 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 1 35 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 458 555 - -
Sto9g1952 831 ProSiteProfiles Zinc finger PHD-type profile. 398 450 IPR019787 -
Sto9g1952 831 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 790 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 495 512 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 1 23 - -
Sto9g1952 831 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 790 - -
Sto9g1952 831 Gene3D - 683 805 IPR043151 -
Sto9g1952 831 MobiDBLite consensus disorder prediction 291 324 - -
Sto9g1952 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 359 454 IPR013083 -
Sto9g1952 831 SMART PHD_3 400 448 IPR001965 -
Sto9g1952 831 MobiDBLite consensus disorder prediction 468 482 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 204 257 - -
Sto9g1952 831 CDD PHD_SF 400 447 - -
Sto9g1952 831 MobiDBLite consensus disorder prediction 204 247 - -
Sto9g1952 831 Pfam PHD-finger 401 448 IPR019787 -
Sto9g1952 831 SUPERFAMILY FYVE/PHD zinc finger 391 455 IPR011011 -
Sto9g1952 831 ProSitePatterns Zinc finger PHD-type signature. 401 447 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1952 Sto-Chr9 23694241 23701333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1952 401 465 Core DNA Replication Machinery Family AT4G12620 39.189 3.76e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto9g1952 PHD 2.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1952 - - gmx:100807139 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1952 9 23694241 23701333 Sto9g1952 9 23694241 23701333 ECH