Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1935 ATGGTGAAGTTTAGGGGAGGTCTTGTCATAGTCAAGCTTAACATTTTAGCTGATGGAGAAAAACCCATGGTATCGATCTTAAGGTGGCAATCGAAACCTAGGTTTCCCAGAATCAACATGGCTATGACTCCATTGATTATGTTCTCCGTGAGGATAACCATATCAGGAGCTACAGGGGATAGATGTTGCAGGTGCGGTTGTTTAAATGCTCAAGAGAGGGCTTTGGTGGTCGATTTCGAGAATGACAAAAGAAGGAGACCAACACGGGGGTGCCAACAGACAAAAGTGGTTGCAAAGGAAGAGTTAGACGTTAGAGGGGACTCATCGGAAGAGGAATCAAGCAACAACAAGAAGGCTGGGAGAAGTGCAATCTTAGGGGGAGGAGGACCATCTGAGATTGCCCCTTTTTCAACGTCTTCTTCATCATCCTCTCTTCAGATTTCATCTTCATCTGGTCTTTTTATCGTTCCCGGAGGAAGATTCTTGGAGGATATGAGGAGAGGCAGAGGAGCCGCCGCTGTCAAACCGGCGGCGGCGGTTGTTGACGCGGCGGTCGAACTCAACGGATCCGGATCAAGGACGATTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGTAGATTCGCCGCCGAGATCAGAGACCCGTTGAAGAAAGCGCGTGTTTGGCTCGGCACGTTCGATTCAGCCGAGGAAGCCGCTCGAGCCTACGACGCAGCCGCTAGAGCTCTCCGTGGACCCAAGGCCAAGACCAACTTCCCCCTCTCTCCTTCTTCCCTCTCGCCGTTCTGCTATCACACCGGAAACCCTAACGTCAACGACGAAGTTTTGGATCACCGGTTGtacgccgccgccgccgctaaCAACCACGGCTTCCAAGATCACCAGATTCAGCGGCCGGCCACCAGTAGCATGAGCAGCACCTCCTACAGCGGGCCCCGGCCTCCGTCAACGGCGGCGACTCGGAGATATCCGCGATCTCCACCGGTCATGCCTGAGGATTGCCACAGCGACTGCGATTCGTCATCGTCGGTGATCGATGGAGACGGCGACGTCGACGGCGGAGATATcgcgtcgtcgtcgtcgtttCGTCGGCCGTTGCCGTTGCCTTTCGATCTGAATTTCCCACCGTTGGATGGTGCCGACGTGGCGAGTGATGATCTTCACTGTACCGCTCTCTGCCTCTGA 1197 0.523 MVKFRGGLVIVKLNILADGEKPMVSILRWQSKPRFPRINMAMTPLIMFSVRITISGATGDRCCRCGCLNAQERALVVDFENDKRRRPTRGCQQTKVVAKEELDVRGDSSEEESSNNKKAGRSAILGGGGPSEIAPFSTSSSSSSLQISSSSGLFIVPGGRFLEDMRRGRGAAAVKPAAAVVDAAVELNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARALRGPKAKTNFPLSPSSLSPFCYHTGNPNVNDEVLDHRLYAAAAANNHGFQDHQIQRPATSSMSSTSYSGPRPPSTAATRRYPRSPPVMPEDCHSDCDSSSSVIDGDGDVDGGDIASSSSFRRPLPLPFDLNFPPLDGADVASDDLHCTALCL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1935 398 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 165 375 - -
Sto9g1935 398 Gene3D AP2/ERF domain 200 259 IPR036955 GO:0003700|GO:0006355
Sto9g1935 398 SUPERFAMILY DNA-binding domain 200 259 IPR016177 GO:0003677
Sto9g1935 398 Pfam AP2 domain 199 249 IPR001471 GO:0003700|GO:0006355
Sto9g1935 398 MobiDBLite consensus disorder prediction 294 319 - -
Sto9g1935 398 ProSiteProfiles AP2/ERF domain profile. 200 257 IPR001471 GO:0003700|GO:0006355
Sto9g1935 398 CDD AP2 199 259 IPR001471 GO:0003700|GO:0006355
Sto9g1935 398 MobiDBLite consensus disorder prediction 101 146 - -
Sto9g1935 398 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 165 375 - -
Sto9g1935 398 MobiDBLite consensus disorder prediction 294 366 - -
Sto9g1935 398 PRINTS Ethylene responsive element binding protein signature 201 212 IPR001471 GO:0003700|GO:0006355
Sto9g1935 398 PRINTS Ethylene responsive element binding protein signature 223 239 IPR001471 GO:0003700|GO:0006355
Sto9g1935 398 MobiDBLite consensus disorder prediction 101 117 - -
Sto9g1935 398 SMART rav1_2 200 263 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1935 Sto-Chr9 23561281 23563968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1935 165 398 AP2-EREBP Transcription Factor Family AT3G20310 59.004 3.18e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto9g1935 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1935 K09286 - pvy:116145234 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1935 9 23561281 23563968 Sto9g1935 9 23561281 23563968 ECH