LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g1901	ATGATGATGGAAGCGACTTGCAGTGATTCTATGGGAAACTCGAACTCCGATCGGCATTCTTCTCCCCTCATTTCCTTCAACGGGAAACGGCTCGTCGTCGATGAAATGGATTTCTTCGCCGATGAGAATTCCAAGAAGGATAGTATTAATAATAACACTAGTcatcaacaaaataataatattgttgatGATGAAGATCATGATCACATGCTCCACAGTATAGAGCTTCAAGTAGAtTTTGAAGCATTGGTAGCTGAATTGGAGCAGATGAATGCTGAAAATAGACGTTTGAAGGAGCAAATTGATCAAGCTAACAATAACTATAATGCCTTACATATGCAACTTCTCAAGCTCATGCAGAAGAAGCAACATGATGATGATCATCATgggATTAAGGAAACCCTAGATGACCAGAAGAGAAGAAATAATGGAAGCAAAAATATGGTTGCAATGCAATTCATAGAAATGGGTGTGAATGCTGACAAAAAccacaataattttcttaggaAAGATCATCATCAAAGTGGAGAAGCAAGATTATTGGGAGAAAGCAAAAGCAGCAATAATATGGTTGAGTTGaaagatcatcatcatcatggtaattataatcatcatcatcataattacAAGAAGATGGTAGATGGAAACAAAGGAATAAGCAGATCATCAAGGGATCATCATCATAACATTATTACTGAGCAAGATCAGAGAGATCATATGAATGATaatgatcaaaataataataataataataataacaacaacaacagcaacaacaacaataatgacCATTCGGAGGAAGCAATAGTCCCAGGGTGGCTGTCGAATAGAGTGTCAAAACTAAGCCCTTCGAAGAGAGATAACGTTAATGTGGATCATCAAACATCGAAGACCTTATCAATGATCAAGAAAGCTCGTGTTTCAGTTCGTGCACGATCAGAATCCTCAATGATTTCTGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAATCCATGTCCAAGAGCTTATTATCGTTGCACTATGGGGGCTGGTTGTCCCGTCCgaaaacaaGTACAAAGATGTGCTGAAGATAGGAGCATACTCATCACAACATACGAAGGGCAGCACAACCACCCACTCCCTCCCACCGCGAAGACGATGGCTTCCACCACATCGGCCGCCGCCTCCATGCTCCTCTCCGGCTCGATGCCGAGCAGCGACCCCGGCGCCGGCATAATGAACCCCAACATTCTAGAAAGCGCCGTGCATTGCACACAAAACTTCGCTACCCTCTCAGCCTCAGCTCCATTTCCCACCATCACATTGGACCTCACAGCCCaaaccaataataataataacaataacaacaataataattcgTCGTCACAACCGCCACAAATGAGCAATGTGCTACCTCCAAGCCTTTTTGGACAATCACTTGTGAGTGACAAAACCAAGTTTTCCGGCCTACATATCAATGGGACCCACgcgaataataataatagtagtagtGAAGGAACGGCGTCGTTTGCCGACACGGTGAATGCTGCAACCGCTGCTATTACTGCGGATCCTAATTTTACGGCGGCTCTCGTCGCCGCCGTGACGACGATTATCGGGAGTTCCTATTCCAACAACGGCGGCGGCACCAATAACGCGTGA	1656	0.3943	MMMEATCSDSMGNSNSDRHSSPLISFNGKRLVVDEMDFFADENSKKDSINNNTSHQQNNNIVDDEDHDHMLHSIELQVDFEALVAELEQMNAENRRLKEQIDQANNNYNALHMQLLKLMQKKQHDDDHHGIKETLDDQKRRNNGSKNMVAMQFIEMGVNADKNHNNFLRKDHHQSGEARLLGESKSSNNMVELKDHHHHGNYNHHHHNYKKMVDGNKGISRSSRDHHHNIITEQDQRDHMNDNDQNNNNNNNNNNNSNNNNNDHSEEAIVPGWLSNRVSKLSPSKRDNVNVDHQTSKTLSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGAGCPVRKQVQRCAEDRSILITTYEGQHNHPLPPTAKTMASTTSAAASMLLSGSMPSSDPGAGIMNPNILESAVHCTQNFATLSASAPFPTITLDLTAQTNNNNNNNNNNNSSSQPPQMSNVLPPSLFGQSLVSDKTKFSGLHINGTHANNNNSSSEGTASFADTVNAATAAITADPNFTAALVAAVTTIIGSSYSNNGGGTNNA	551

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto9g1901	551	ProSiteProfiles	WRKY domain profile.	313	379	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sto9g1901	551	Coils	Coil	73	121	-	-
Sto9g1901	551	Gene3D	WRKY domain	303	380	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Sto9g1901	551	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	228	544	IPR044810	GO:0003700
Sto9g1901	551	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	13	71	IPR044810	GO:0003700
Sto9g1901	551	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	78	208	IPR044810	GO:0003700
Sto9g1901	551	Pfam	WRKY DNA -binding domain	320	377	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sto9g1901	551	MobiDBLite	consensus disorder prediction	7	21	-	-
Sto9g1901	551	MobiDBLite	consensus disorder prediction	443	473	-	-
Sto9g1901	551	PANTHER	WRKY TRANSCRIPTION FACTOR 6-LIKE	78	208	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g1901	Sto-Chr9	23293450	23297134	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g1901	83	537	WRKY Transcription Factor Family	AT4G04450	42.208	2.40e-92	288

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sto9g1901		WRKY	2.5e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g1901	-		-	adu:107496306	362.844

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Sto9g1901	9	23293450	23297134	Sto10g0483	10	3920785	3923429	ECH
Sto7g0697	7	5120539	5129717	Sto9g1901	9	23293450	23297134	ECH
Sto12g0490	12	3215827	3217722	Sto9g1901	9	23293450	23297134	ECH
Sto9g1901	9	23293450	23297134	Sto9g1901	9	23293450	23297134	ECH

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