Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1857 ATGTCAGTGGATTTAGATGACCTTGCTGTTTTAATCCTTGATGAGGCAGATCGTCTACTAGAGCTTGGATTTAATGCTGAAATTCAAGAACTTGTTCGGTTGTGTCCCAAGAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGACAAAACCTTTGCGCCTTTCTGCTGACCCATCTGCAAAACGTCCATCAACCTTGACTGAGGAGTAA 246 0.4228 MSVDLDDLAVLILDEADRLLELGFNAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPSTLTEE 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1857 81 Pfam DEAD/DEAH box helicase 3 55 IPR011545 GO:0003676|GO:0005524
Sto9g1857 81 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 81 - -
Sto9g1857 81 Gene3D - 1 74 IPR027417 -
Sto9g1857 81 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 67 IPR027417 -
Sto9g1857 81 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 66 IPR014001 -
Sto9g1857 81 PANTHER ATP-DEPENDENT RNA HELICASE RHLE 1 81 - -
Sto9g1857 81 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 12 20 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1857 Sto-Chr9 22953701 22954053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1857 2 66 Eukaryotic Initiation Factors Gene Family AT3G13920 38.462 4.32e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1857 K13181 - pvy:116132639 143.28