Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1811 atgggaatgggaatgatgAGTAGTAATAATATTATGGAAGGAGGAGGGGCGGAAGGATCGTCGTCGATGGCGATGCAGAAGAAAAATGGGAGAGGGAAAATAGAGATAAAGCGAATCGAGAACACGACGAATCGGCAAGTGACATTCTGTAAGAGGCGCAATGGATTGCTGAAGAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCTAGCCGTGGTCGCTTGTATGAtGTTAGAGCAACTATAGAGAGGTACAAGAAAGCATGTGCTGCTTCCTCAAACACTGAATCTGTTTCTGAAGCTAACACACAGTTTTACCAGCAAGAATCATCCAAGTTAAGAAGGCAGATTCATGAAATTCAGAATTTAAACAGGCACATACTTGGTGAAGCTCTTAGCTCTTTGAGTCTTAAGGAACTGAAGAACTTAGAGGGAAGATTGGAAAAAGGTTTGAGCAGAGTTAGATCTAGAAAGCATGAAACGTTATTTGCTGAAGTCGAGTTCATGCAAAAACGGGAAATCGAGCTGCAAAACCATAATAATTACCTGCGAGCAAAGATAGCGGAACATGAGAGAGCACAACAACAAGAAGAAGAGCAGGCAAATAATGTGATGCAAGCAAGTGTGTGTGACTGCGAATCGTTGCCTTCCCAATCATATGATCGCAATTTCTTCCCTGTCAATCTCTTGCCTACTACCAATAATCATCACTATTCTCGTCATCAAGACCACACTGCTCTCCAACTTgtctaa 774 0.4057 MGMGMMSSNNIMEGGGAEGSSSMAMQKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYDVRATIERYKKACAASSNTESVSEANTQFYQQESSKLRRQIHEIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREIELQNHNNYLRAKIAEHERAQQQEEEQANNVMQASVCDCESLPSQSYDRNFFPVNLLPTTNNHHYSRHQDHTALQLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1811 257 SUPERFAMILY SRF-like 30 100 IPR036879 GO:0003677|GO:0046983
Sto9g1811 257 ProSiteProfiles K-box domain profile. 110 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g1811 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 83 IPR002100 GO:0003677|GO:0046983
Sto9g1811 257 PANTHER MADS BOX PROTEIN 26 250 - -
Sto9g1811 257 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 26 250 - -
Sto9g1811 257 Pfam K-box region 108 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g1811 257 MobiDBLite consensus disorder prediction 1 24 - -
Sto9g1811 257 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Sto9g1811 257 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Sto9g1811 257 CDD MADS_MEF2_like 30 101 IPR033896 GO:0000977|GO:0045944
Sto9g1811 257 Gene3D - 41 135 IPR036879 GO:0003677|GO:0046983
Sto9g1811 257 Coils Coil 183 214 - -
Sto9g1811 257 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Sto9g1811 257 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Sto9g1811 257 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1811 Sto-Chr9 22558936 22567244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1811 6 257 MADS-box Gene Family AT3G58780 63.985 5.12e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto9g1811 K-box 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1811 K09264 - gmx:100808734 367.851