Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1748 ATGGATAATGCAAACGAAGCATCGTCTTCCTTGAGTTTTGCATCATCATACTTATCAAATGGGTCTAGTAATCACAACCCGTCTGCCTCTACCAGCAATGAGCATGTGGCGaatcttgaaaatttgagtcTGAGTAGACTTAGTGGAAGTCTTGAGAAGCTATTAATTGATACTGGATATGACTATAGTGATGCTGAGATTGTTGTTGAGGACATTCCTGTGGGTGTTCATAGGTGTATATTGGCTTCGCGTAGTCAGTTTTTCCATGAACTTTTTAAGAAGGGGAATGATTGTTCTGTGAAGGAAGGTAAGCCGAGGTATCTCATGTCTGATCTAGTGCCTTATGGAGCAGTTGGACATGAAGCCTTCCTTGTTTTTTTGCATTATTTGTATACGGGAAAGCTAAAGGCATCGCCGTCGGAAGTATCAACGTGTGTTGATGAAGCATGTGCCCATGATGCGTGCCGCCCTGCTATTAATTATGCTTTAGAACTGATGTATGCTTCTGCCACATTTCAGATGAAAGAGCTCGTTCTACTTGTCCAGCGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCGATTCTTTTGGCCGCCTTCCACTGCCAATTAAATCAGCTTCTCTCACACTGCATCCAAAGAGTAGTGAGGTCAGATCTCGACAACACTACTTTGGATAGAGAGCTCCCGTATGAAGTCTTTAGTGAAATCAAATCCCTCCGAGTCAAATCTCTGCCAGAATCCTCACTTGAAGCAATGGAAGTGGAAGATCCTACTGAGAAGAGTATCAGGAGAATCCACAAGGCATTGGACTCTGATGATGTTGAGCTGATGAAGCTTCTTCTGAACGAGTCTAGTGTCACTCTAGATGATGCTTATGCCCTACACTATGCCTGTGCCTATTGTGATTCTAAGATCGTTCAAGAAGTTCTTAATATGGGGTTGGCTGACATTAACCGTAGGAATCCCCGAGGATATACAGTTCTTCACGTGGCTGCTAGGCGAAAAGAGCCGACGATTTTAGTAGCACTGTTGAATAAAGGGGCTGGTGTGTTGGATACCACATCTGATGGACAAACTGCGGTTGCAATTTCTCGGAGGTTGACAAGACCGAAGGATTACAATGAGATAGCAGTGCAGGGGAAGGAATCTAACAAAGACAAGCTCTGTGTTGATGTCCTGGAGAGAGAGATGAGAAGAAATTCAATGTCTGTGAATGCTTCAGTTTCGTCTCAGCTAACTGCCGATGATTTGCACATGAGGCTTGACTACCTGGAAAATAGAGTTGCATTCGCGAGGCTTTTGTTTCCTGCCGAGGCTAAGGTCGCCATGGAGAATGCCGAGGCAGATTCAGAAGTTGATCTTAACGAAACACCCTCGGCACGAACCCGAAAACTCCAGTCGAGATTGCATGCCCTTCAGAAAACAGTCGAGAATGGCCGGCGCTTCTTTCCCCATTGCTCGGAGGTCCTTGATAAGTTTCTAGAAGATGATATCCCAGATGTTTTCTTCCTAGATAAGGGCTCGGAAGACGAGCAGAGAATGAAGAAATCGCGCTTCATGGAGCTGAAAGATGATGTGCAGAAGGCATTTCATAAGGACATGGCTGAAAACAATGGTTCAGGTTTTTCATCCACAGTTTCTTCCTCATCATCCTCATCTCCCAGAAAAGGTCTGAGCCAAAGATTGAGGAAAAAGTGA 1716 0.4435 MDNANEASSSLSFASSYLSNGSSNHNPSASTSNEHVANLENLSLSRLSGSLEKLLIDTGYDYSDAEIVVEDIPVGVHRCILASRSQFFHELFKKGNDCSVKEGKPRYLMSDLVPYGAVGHEAFLVFLHYLYTGKLKASPSEVSTCVDEACAHDACRPAINYALELMYASATFQMKELVLLVQRRLLNFVEKALVEDVIPILLAAFHCQLNQLLSHCIQRVVRSDLDNTTLDRELPYEVFSEIKSLRVKSLPESSLEAMEVEDPTEKSIRRIHKALDSDDVELMKLLLNESSVTLDDAYALHYACAYCDSKIVQEVLNMGLADINRRNPRGYTVLHVAARRKEPTILVALLNKGAGVLDTTSDGQTAVAISRRLTRPKDYNEIAVQGKESNKDKLCVDVLEREMRRNSMSVNASVSSQLTADDLHMRLDYLENRVAFARLLFPAEAKVAMENAEADSEVDLNETPSARTRKLQSRLHALQKTVENGRRFFPHCSEVLDKFLEDDIPDVFFLDKGSEDEQRMKKSRFMELKDDVQKAFHKDMAENNGSGFSSTVSSSSSSSPRKGLSQRLRKK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1748 571 Pfam NPR1/NIM1 like defence protein C terminal 371 456 IPR021094 -
Sto9g1748 571 Pfam NPR1/NIM1 like defence protein C terminal 456 555 IPR021094 -
Sto9g1748 571 SUPERFAMILY Ankyrin repeat 259 372 IPR036770 -
Sto9g1748 571 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 569 - -
Sto9g1748 571 SMART BTB_4 63 189 IPR000210 GO:0005515
Sto9g1748 571 MobiDBLite consensus disorder prediction 536 571 - -
Sto9g1748 571 MobiDBLite consensus disorder prediction 543 563 - -
Sto9g1748 571 CDD BTB_POZ_NPR_plant 52 176 - -
Sto9g1748 571 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Sto9g1748 571 Pfam Ankyrin repeats (3 copies) 272 355 IPR002110 GO:0005515
Sto9g1748 571 Gene3D Potassium Channel Kv1.1; Chain A 28 221 IPR011333 -
Sto9g1748 571 SUPERFAMILY POZ domain 48 187 IPR011333 -
Sto9g1748 571 ProSiteProfiles Ankyrin repeat region circular profile. 329 356 - -
Sto9g1748 571 Gene3D - 249 478 IPR036770 -
Sto9g1748 571 Pfam BTB/POZ domain 61 142 IPR000210 GO:0005515
Sto9g1748 571 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Sto9g1748 571 PANTHER REGULATORY PROTEIN NPR3 1 569 IPR044292 GO:0009862|GO:2000022|GO:2000031
Sto9g1748 571 SMART ANK_2a 329 358 IPR002110 GO:0005515
Sto9g1748 571 SMART ANK_2a 295 325 IPR002110 GO:0005515
Sto9g1748 571 SMART ANK_2a 266 294 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1748 Sto-Chr9 22000487 22005712 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto9g1748 NPR1_like_C 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1748 K14508 - gmx:100816582 866.685