Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1746 ATGCCGACCTTGATAGAGTTGTCGCGGATTTTGTTTCTGCTTCTGGTGATTGGGAATGGGGGAGACCATGTTGCTTGGAGATATAGTTCGGATGGCGTTTTCTCTACTAAGTCTGCTTATCATGCCTTTACAAAGGAAGATGGTTCTGTGAGACATAGTTTTTGGAAGTTGCTGTGGAAGTGGAAGGATATGGAGAAAGTTCGTTCCTTTCTTTGGCTTTGTGGCCACGACCGTCTCCTCACTAATGTTGCGAGGAAGCGACGTGGTATGGCTGCTACGGATGTATGTACCCGTTGCAATGGATCGGCTGAAGACTTGCTTCATACTCTGAGGGATTGTGCTAAGACTAGGTGTATCTGGCTTAAACTGGTCCATCCAAGTAAGTGGCACCTTTTCTTTAATGCTTCTCGTTTGAACTGGTTGTCTCTGAATCTGTGGAGTAATATGGGTTGGCATGGGAGTGATTGGGGTGTTATTTTTTCTTATGCTTGCTGGTATATTTGGCGTATGCGTAATGCAGAGATCTTTGATAGCCCTCATTTTGGGAGTACGGACCCTGTGTTCGCCATTCTTAAGCTTTCGGGTGATTCTTCTCGGGCTATGAATAAACTGTGTGCTGGTAATTCTGGGCCTTCTTCTCATGTTGAGCGTTTTATCTGTTGGGAGAAACCGAATGCTGGGTGGATTAAGTTTAATGTGAATGCTGCTAGAAGAGAGACTCTAAACCTTACTGCGTGTGGTGGGATCGCCCGTGATAGTGATGGCCGTTTCCTTATTGGTTTTATGCGTAATCTAGGTGATGGGTCGGTGTTGAATGCTGAGCTGTGGGGTATTTCTTGTGCTCTTGAGGTTACTTGGCGTTCGAGGTTTAAGAAGGTCTTGGTGGAGTCTGATTGTCTGCTTGCTGTGAATTTGGTTAATGACTCTTCCTTCCCCTCTCATCCTTGTTCGCCTATTCTGGCTCGGATTCACTACTGGATTTCTTGCGACTGGGAGGTTGAGGTTGTGCACGGGAGGCCATGCAGGAGGAGCACCCTATTAGGGTTTCTCCATCCCAATGCTTCTCCCTTACTCAAATCCTTTGCTTCACTTGTACCCATATCTCAATCAGATCTACCTCAACAAAAACAAGAAGGAAATGAATCGTTTACAGTTTCTTATCTCATCAACTCATGTGGCTTGTCGGCCAAAGAAGCTACTGATGCATCCAAAAGGGTTCATTTTAAAGACTCAGAAAATCCCGATTTGGTACTTAATCTCTTCAGGAGCTACGGATTCTCAGAAACCCAGTTATCTAAATTAGTGAAACTTCTTCCATGGGTCCTTCAGGCAAATCCTGAGAAGACCCTTTCGCCTAAGCTAAGGTTTTTTGAGTCTATTGGAATTTCATCTTCTGAAGTTTCAAAACTCATCCTTTCTAATCCTATAATCTTAAATTGGAGCTTAGAGAAATATATAATCCCCCGCTATGAAGTCCTTAAGAGTGTGCTTGGTCCCCATGAGAAACTAAATATAACTTTTAAACGTTCGGGATGGATTTCTCACCACAATGAGGTGACGAATATTGTTCCAAACACAAAGGTTTTGAGAGAGATTGGAGTGCCTCAATCTTCTCTCACACTATTGGCAACTACTTATCCAAGTTTAGCATTTATGAAGCATGCAAAGTTTGTTGAACATGTCAAGTTTGCTAAGGAATTAGGAATCAAGCCATTTAGGGCTACTTTCATTCTTGCAATTTATGTCTTGTCAGTTACTAGGAAATCAACCTGGGAATCAAAGATGGATATTTTTGAGAGGTGCGGCTGGTCCAGGGATGTCACTCTTTCAGTATTTGGGAAGTATCCATTATGCATGGTGCGGTCAGAGGAGAAAATCATAAGCACCATGAAGTTCTTTGTGGATGAAATGCACATGATGCCAGAAGAGTTAGCTAAATGCCCAGCAGTACTTAGCTATAGCTTGAAGCAGAGGATTATTCCTAGATGCTCAGTAGttcaatttttgaaaatgaaGGGTTTGATCAATACTTATCCGTCATTATCTTCCATTCTTTCAACAAGTGAGAAAAAATTTCAGGAGAAATTTTTTATCAGATTCCCAGAAAGTGTTCCTCAGCTATTGAACATCTATAAAGTTCTTGAAACAGTTTATGCCTTTTTTCTGATGTTAGGCATTTGCCTTTTTGGGATAGATCTAACTCAACAAAAACAAGAAGGAGGTGAATCGTTTCCAGTTTCTTATCTCATCAACTCATGTGACTTGTCGGCCAAAGAAGCTACTCAAGTGTCCAAAAGGGTTCATTTTGAAGACCCAGGAAATCCCGATTTGGTACTTAATCTTTTAAGGAGCTACGAATTCTCGGAAATCCAGATATCTAAATTAGTGAAACTTCTTCCATGGGTCCTTCAGGCAAACCCTGAGAAGACCCTTTTGCCTAAGCTAAGGTTTTTAGAGTCTATTGGAATTTCATCTTCTGAAGTTCCAAAACTCATCCTTTCTAACCCTGTACTCCTAACATTAGGCTTAGAGAAAAGTATAATTCCCCGCTTTGAAACCCTCAAGAGTGTGCTTGGTCCCCATGAGAAACTAGCATTTATGAAGCATGCAAAGTTTGTTGAACATGTCAAGTTTGCTAAGGAATTAGGAATCAAGCCATTTAGGGCTACTTTCATTCTTGCAATTTATGTCTTGTCAGTTACTAGGAAATCGACCTGGGAATCAAAGATGGATATTTTTGAGAGGTGCAGCTGGTCCAGGGATGTCACTCTTTCAGTATTTGGGAAGTATCCATTATGCATGGTGCGGTCAGAGGAGAAAATCAGAAGCACCATGAAGTTTTTTGTGGATGAAATGCACATGATGCCGGAAGAGTTGGCTAAATGCCCAGCACTACTTGGCTATAGCTTGAAGCAGAGGTTTATTCCTAGATGCTCAGTAGttcaatttttgaaaatgaaGGGTTTGATCAATACTTATCCGTCATTATCTTCCATTCTTTCAACAAGTGAGAAAAAATTTCAGgagaaattttttattagattcCCAGAAAGTGTTACTCAGCTATTGAACATCTACAAAGGTGTTGTAGAACCTTTACCTGAAGCTCAGTGA 3114 0.4098 MPTLIELSRILFLLLVIGNGGDHVAWRYSSDGVFSTKSAYHAFTKEDGSVRHSFWKLLWKWKDMEKVRSFLWLCGHDRLLTNVARKRRGMAATDVCTRCNGSAEDLLHTLRDCAKTRCIWLKLVHPSKWHLFFNASRLNWLSLNLWSNMGWHGSDWGVIFSYACWYIWRMRNAEIFDSPHFGSTDPVFAILKLSGDSSRAMNKLCAGNSGPSSHVERFICWEKPNAGWIKFNVNAARRETLNLTACGGIARDSDGRFLIGFMRNLGDGSVLNAELWGISCALEVTWRSRFKKVLVESDCLLAVNLVNDSSFPSHPCSPILARIHYWISCDWEVEVVHGRPCRRSTLLGFLHPNASPLLKSFASLVPISQSDLPQQKQEGNESFTVSYLINSCGLSAKEATDASKRVHFKDSENPDLVLNLFRSYGFSETQLSKLVKLLPWVLQANPEKTLSPKLRFFESIGISSSEVSKLILSNPIILNWSLEKYIIPRYEVLKSVLGPHEKLNITFKRSGWISHHNEVTNIVPNTKVLREIGVPQSSLTLLATTYPSLAFMKHAKFVEHVKFAKELGIKPFRATFILAIYVLSVTRKSTWESKMDIFERCGWSRDVTLSVFGKYPLCMVRSEEKIISTMKFFVDEMHMMPEELAKCPAVLSYSLKQRIIPRCSVVQFLKMKGLINTYPSLSSILSTSEKKFQEKFFIRFPESVPQLLNIYKVLETVYAFFLMLGICLFGIDLTQQKQEGGESFPVSYLINSCDLSAKEATQVSKRVHFEDPGNPDLVLNLLRSYEFSEIQISKLVKLLPWVLQANPEKTLLPKLRFLESIGISSSEVPKLILSNPVLLTLGLEKSIIPRFETLKSVLGPHEKLAFMKHAKFVEHVKFAKELGIKPFRATFILAIYVLSVTRKSTWESKMDIFERCSWSRDVTLSVFGKYPLCMVRSEEKIRSTMKFFVDEMHMMPEELAKCPALLGYSLKQRFIPRCSVVQFLKMKGLINTYPSLSSILSTSEKKFQEKFFIRFPESVTQLLNIYKGVVEPLPEAQ 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1746 1037 Pfam Reverse transcriptase-like 232 337 IPR002156 GO:0003676|GO:0004523
Sto9g1746 1037 CDD RNase_H_like 232 337 IPR044730 -
Sto9g1746 1037 Pfam zinc-binding in reverse transcriptase 34 120 IPR026960 -
Sto9g1746 1037 Gene3D - 228 339 IPR036397 GO:0003676
Sto9g1746 1037 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 864 1029 - -
Sto9g1746 1037 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 741 863 - -
Sto9g1746 1037 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 370 712 - -
Sto9g1746 1037 Pfam mTERF 779 864 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 Pfam mTERF 897 1008 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 Pfam mTERF 418 633 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 Pfam mTERF 585 693 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 Gene3D Transcription termination factor 3, mitochondrial 751 1018 IPR038538 -
Sto9g1746 1037 Gene3D Transcription termination factor 3, mitochondrial 499 703 IPR038538 -
Sto9g1746 1037 SUPERFAMILY Ribonuclease H-like 228 336 IPR012337 -
Sto9g1746 1037 SMART mt_12 504 535 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 609 640 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 468 499 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 924 955 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 540 570 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 641 675 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 829 860 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 956 990 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 574 604 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 432 463 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 SMART mt_12 793 824 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 PANTHER CGI-12 PROTEIN-RELATED 741 863 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 PANTHER CGI-12 PROTEIN-RELATED 864 1029 IPR003690 GO:0003690|GO:0006355
Sto9g1746 1037 PANTHER CGI-12 PROTEIN-RELATED 370 712 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1746 Sto-Chr9 21938564 21944601 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto9g1746 mTERF 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1746 K15032 - pvy:116126828 443.351