Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1739 ATGGGAGATGAGGCAGTTGTATGGGAAGCAGTAGCAATTCCTCCCGAGAATCGCTCCCACACTGAAGAGCTCCTTCGGAAATTGAGGTCGGACCAAGGACTTGTGGAGCTCCTATGGCAAAATGGACAAGTAGTTTTGCACAGCCAAACGCAAAGGAAGCCGGTTATGAATAGTAATGACTCGAGGCAGATTCAGAGAAATGATCAATCTACAATCAGGGCTAGTGAGTCGTATGGGAACTCGAGTAATTTGATTCATGAAGATGATACGGTGTCGTGGATGCAATACCCGTTTGAGGATCCATTGGAACAAGAATTCTGTTCAAGCTTTTTATCAGAACTGCCGTCGTGTTCTGTTGAGTCTGATAAGCCAATCAGgcaatttgaagaagaaaagtatGTGAAATTTGGTCCCTACAATGCCCCCCATGTGACTGCAAGTTCACAACAAACTCCTATAAAACCCGCCTGTGCTCAGGAATTCTCAGGAAATCCTATGCCTGCTCCAAGATCTCATTTTCCTGATTTACCACAGAGAAACATTGACTTTGGTGGACCACAAAAAGTCCTCAAACTTTCTCAGTTTTCAGCACCCCCCAAGGTAGCTTCAACATCTTCTAATGCACACTTTGAAGAGAAAGGTAAGGGTCGTCTATTGCATAGTGAGGCTCGAGATGGCTCAGTGATGACTGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCAAGACCTAGATGCAAGCAGGGTATCAAGTAGTGGTGTTCAGACCAATACTACACATGCTGAGCCTGAACGCCTCAGGGATGATGTCCAGAAATCAATTCCTTATAGCGAAAAAGGGAAATCAGAGGCCATTGAACCAACTTTGACTTCATCATCCAATGGCTCAGATAGTCTTGGAAAAACTTGCTCTAGGTCTACGCAAAACCATGgccagaaaaggaaaaagacagATGCAGAAGAGTCTGAGGAACATAGTGAGGCTACAGAACATAAATCAGCTATAGAAAACAAGGCAGCACAGCAGACAAGGCCTTCCCGAAGGAACCGTGCAGCCGAAGTTCATAATCTCTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAACAAGACAGATAAAGCGTCAATGCTAGATGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGCATGGCACCAGTAATGTTTCCAGGAATTCAGCAATATATGTCCCAGATGGGTATGGGAATGGCTACACCTTCTTTTCCTCCTATTCACAATTCCATGCAATTACCAAGAGCGTCTCTTGATCAGTCCATGTCCGTGGCTCAGATGCCAAACCAGGCTGCACTGTGTCAAACTCCTGTTTTCGGTCCGTTTACTTATCAAAGTCAGATGCAAAACCAAGCTTTTTCAGAGCAATATGCACGTTACATGGGGTATCATCTTATGCAAAATGCCTCTCAGCCGATGAATTTATTCGGATATAGTTCCCAGGCAGTACAGCATAGTCAAACGCCAATTCCACCCAGCAGCAGCAGTGGACCCCAAACTGGAGCTGCAAATATTGATGACACAGTAACTGGCAAGATGGTATCAGAAACACTCTCAATTGGAGGTTTGGCTGGAGCCAATGCCCAAAGCATCAACATATAA 1701 0.4392 MGDEAVVWEAVAIPPENRSHTEELLRKLRSDQGLVELLWQNGQVVLHSQTQRKPVMNSNDSRQIQRNDQSTIRASESYGNSSNLIHEDDTVSWMQYPFEDPLEQEFCSSFLSELPSCSVESDKPIRQFEEEKYVKFGPYNAPHVTASSQQTPIKPACAQEFSGNPMPAPRSHFPDLPQRNIDFGGPQKVLKLSQFSAPPKVASTSSNAHFEEKGKGRLLHSEARDGSVMTVGSSHCGSNQVPQDLDASRVSSSGVQTNTTHAEPERLRDDVQKSIPYSEKGKSEAIEPTLTSSSNGSDSLGKTCSRSTQNHGQKRKKTDAEESEEHSEATEHKSAIENKAAQQTRPSRRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPVMFPGIQQYMSQMGMGMATPSFPPIHNSMQLPRASLDQSMSVAQMPNQAALCQTPVFGPFTYQSQMQNQAFSEQYARYMGYHLMQNASQPMNLFGYSSQAVQHSQTPIPPSSSSGPQTGAANIDDTVTGKMVSETLSIGGLAGANAQSINI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1739 566 SMART finulus 357 406 IPR011598 GO:0046983
Sto9g1739 566 Gene3D - 347 407 IPR036638 GO:0046983
Sto9g1739 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 413 IPR036638 GO:0046983
Sto9g1739 566 MobiDBLite consensus disorder prediction 312 335 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 227 261 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 285 308 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 160 184 - -
Sto9g1739 566 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 26 531 IPR031066 -
Sto9g1739 566 PANTHER TRANSCRIPTION FACTOR PIF5 26 531 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 196 363 - -
Sto9g1739 566 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Sto9g1739 566 Coils Coil 357 377 - -
Sto9g1739 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Sto9g1739 566 MobiDBLite consensus disorder prediction 515 538 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 50 74 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 349 363 - -
Sto9g1739 566 MobiDBLite consensus disorder prediction 262 277 - -
Sto9g1739 566 CDD bHLH_AtPIF_like 351 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1739 Sto-Chr9 21852855 21864215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1739 227 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.701 7.23e-45 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto9g1739 HLH 7.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1739 K16189 - gmx:100784531 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1739 9 21852855 21864215 Sto9g1739 9 21852855 21864215 ECH