Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1720 ATGTCTCGGACTGATAGAATGGCTTCGGATCTCAGCAGAACTGGTCCAGTGGAAAGAGACATTGAACAGGCCATTACTGCATTGAAGAAAGGGGCTTACTTGCTGAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCGTTTCGGCTATCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTAAGCCATGTTTCTAAAATTATATCAGGACAACGTACGCTAATCTTTCAAAGATATCCGCGACCTGAGAAGGAATCCCAgtctttttctcttatttacAATGATGGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATATCGCGCAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAGGTTAATAGCCCCAGAACATACACTAGAAGAAGTTCCCCTTTAAATTCTCCATTTGGTAGTAATGAGAGCTTGCAAAAGGACAGTGGGGATCACCTTCACCTTCATAGCCCCTATGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCACTGTCTGATGTGATTTATTATGCTGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCTAGTGCTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTTTACATGGTCACATGAAGGCCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCCTTGGGCGACGTTTTCATTTGGGGTGAAAGCACAGGTGATGGTGTTCTGGGTGGTGGGGCTCACAATGCTGGTAGTTGTGTTGGTATAAAAATGGATTCTCTATTGCCCAAGGCCTTGGAGTCTGCAGTAGTACTTGATGTACAGAACATTGCTTGTGGTGGACGACATGCTGCCTTAGTAACCAAGCAAGGAGAAATGTTCTCTTGGGGGGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGATTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTAAGTAATACCAATATTGAACTAGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTGATGGCACTTACAATTATGGACTTTTGGGGCATGGAAATCAAGTGAGTCACTGGGTCCCAAAAAGAGTGAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGGGACCGAAAAAATGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTCGAACCTAACTTTTGTCAAGTTGCATGTGGACACAGTCTGACCGCTGCACTTACTACCTCAGGTCATGTCTATACTATGGGTAGTCCTGTCTATGGACAGTTAGGAAATCTTCAAGCTGATGGTAAGTTGCCAAAACGTGTTGAAGGAAAGATCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGGAAGGGTGCAAATGGTCGGTTAGGCCATGGGAATACAGAGGATAGAAATACTCCAACATTAGTGGAAGGTCTGAAAGATAAACAAGTCAAGAGTATTGTTTGTGGTACTAATTTCACTGCAGCAATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGTCGGCTCCcttttaatttcaaaagaaaacGTCACAATTGTTACAATTGTGGACTTGTTTTTTGCCATTCATGCAGCTGTAAGAAGTCTCTTAAGGCTTCGATGGCTCCAAATCCCAATAAACCTTATCGTGTCTGTGATAATTGCTATAATAAACTAAGGAAAACTATTGAAGGTGATTCTTCATCCCATTCTGTGAGCAGAAGAGGAAGTATCAATCAAGGGCCACCTGAATTTATTGATAAGGATGATAAATTTGATTCCAGATCTCGTAATCAGCTTGCTAGGTTTTCTAACATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCAAAGAGAAACAGGAAATTTGAATTCAACAGTAGTCGTGTCTCACCCATTCCAAATGGAGGTTCCCAGTGGGGAGGATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCAACAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTCGAATTGTGTCTCGAGCAACATCCCCAATATCTAGACATCCTAGTCCACCTcgttcaacaactccaaccccAACACTGGGAGGACTTACCTCCCCAAAGATAGCCGTGGATGATGTTAAGAGGACAAACGATAGCCTTAGCCAGGAGATAATTAATTTAAGAGCACAGgtGGAAAATATGACTTGCAAAACTAAACATCAAGAAGTTGAGTTGGAAAGAGCAAGTAAACAGCTGAAAGAAGCAATAGCATATGCTGGTGAAGAAACTGCTAAATGCAAAGCTGCAAAGGAAGTGATCAAGTCTCTTACTGCTCAGTTGAAGGAAATGGCTGAGAGGCTACCTGTAGGAGCATCCAGAAACCTCAAGTCACCTTCTCTTGCTTCCCTTGGATCAAATCCAGGTTCCAATGAAGTCAGCAATTCTTCTATTGATGGATTAAATATTCAAGCTACTAGCCTAGAAACAGACTTAGCTGTATTAAACAATCAACCACTTTCAAATGGATCTAGCACCATCAGTAACCGAAGTGCAGGTCATAACAAACAGAGCCAGTCAGATGCAACAACTAGAAATGGGAGCAGAACAAAAGAAAGTGAGTCTCGTAATGAGACTGAATGGGTTGAGCAAGATGAGCCTGGTGTCTATATTACACTCACTTCCCTCCCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGAAAGCGGTTCAGCGAGAAACAGGCGGAACAATGGTGGTCTGAGAATCGAGCGAGAGTCTACGAGAAGTACAATGTGCGCACGGCCGACAAGTCAGCTGTTGAACAAGCTCAAATGCTTCATCATCCCATGGAATGGGAGAAGATGGCGCAGACTCCCTTAGTAATGGAGACAATGGAGGAGAGCTCCACTGTTTTGAAAAGTCCAACCAATCAGAAAAGTTGGACACTGGCAATTCCACTGGTTCTGGGTAGCAACGAGGGGAATGAGGGACCTAAAGCCacacaagaagaaagaaagttaGAGTGA 3495 0.4303 MSRTDRMASDLSRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSKIISGQRTLIFQRYPRPEKESQSFSLIYNDGSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEVNSPRTYTRRSSPLNSPFGSNESLQKDSGDHLHLHSPYESPPKNGLDKALSDVIYYAVPPKGFFPPDSASASVHSVSSGGSDSLHGHMKAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGESTGDGVLGGGAHNAGSCVGIKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEMFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTAALTTSGHVYTMGSPVYGQLGNLQADGKLPKRVEGKISKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGNTEDRNTPTLVEGLKDKQVKSIVCGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSCKKSLKASMAPNPNKPYRVCDNCYNKLRKTIEGDSSSHSVSRRGSINQGPPEFIDKDDKFDSRSRNQLARFSNMESLKQVESRSSKRNRKFEFNSSRVSPIPNGGSQWGGLNISKSFNPVFGSTKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIAVDDVKRTNDSLSQEIINLRAQVENMTCKTKHQEVELERASKQLKEAIAYAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGASRNLKSPSLASLGSNPGSNEVSNSSIDGLNIQATSLETDLAVLNNQPLSNGSSTISNRSAGHNKQSQSDATTRNGSRTKESESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWSENRARVYEKYNVRTADKSAVEQAQMLHHPMEWEKMAQTPLVMETMEESSTVLKSPTNQKSWTLAIPLVLGSNEGNEGPKATQEERKLE 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1720 1164 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 990 1019 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 949 970 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 143 173 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 764 802 - -
Sto9g1720 1164 Coils Coil 971 991 - -
Sto9g1720 1164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 727 IPR013083 -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 139 192 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 948 970 - -
Sto9g1720 1164 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Sto9g1720 1164 SMART fyve_4 653 722 IPR000306 GO:0046872
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Sto9g1720 1164 SUPERFAMILY PH domain-like 20 128 - -
Sto9g1720 1164 Coils Coil 920 940 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 1145 1164 - -
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Sto9g1720 1164 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1092 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 787 802 - -
Sto9g1720 1164 Pfam FYVE zinc finger 655 721 IPR000306 GO:0046872
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Sto9g1720 1164 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 21 1092 - -
Sto9g1720 1164 SUPERFAMILY RCC1/BLIP-II 265 656 IPR009091 -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 990 1036 - -
Sto9g1720 1164 CDD PH_PLC_plant-like 19 129 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 727 752 - -
Sto9g1720 1164 Gene3D - 20 137 IPR011993 -
Sto9g1720 1164 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Sto9g1720 1164 ProSiteProfiles BRX domain profile. 1032 1087 IPR013591 -
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Sto9g1720 1164 Pfam Transcription factor BRX N-terminal domain 915 950 IPR027988 -
Sto9g1720 1164 SUPERFAMILY FYVE/PHD zinc finger 655 723 IPR011011 -
Sto9g1720 1164 CDD FYVE_like_SF 664 717 - -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Sto9g1720 1164 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Sto9g1720 1164 Gene3D - 222 496 IPR009091 -
Sto9g1720 1164 Gene3D - 497 666 IPR009091 -
Sto9g1720 1164 Pfam Transcription factor regulating root and shoot growth via Pin3 1031 1086 IPR013591 -
Sto9g1720 1164 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Sto9g1720 1164 Coils Coil 864 891 - -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 550 599 IPR000408 -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Sto9g1720 1164 Pfam Regulator of chromosome condensation (RCC1) repeat 498 547 IPR000408 -
Sto9g1720 1164 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
Sto9g1720 1164 Pfam Unstructured region between BRX_N and BRX domain 956 1025 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 833 859 - -
Sto9g1720 1164 MobiDBLite consensus disorder prediction 1020 1036 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1720 Sto-Chr9 21621377 21633497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1720 1033 1097 Major Intrinsic Protein MIP AT1G31880 50.769 4.04e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1720 - - gmx:100806439 1873.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1720 9 21621377 21633497 Sto9g1720 9 21621377 21633497 ECH