Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1719 ATGCAATCAGATGAGAATAAAGTTGCTGTGgagaagaataagaagagaaaACTCAAAACACCCGCTCAGATTTCGGCCTTggagaaattttatattgAGCACAAATATCCCACTGAGGAAATGAAATTGGAACTTGCTGAGGAGTTAGGGTTGACAGAAAAACAAGTATCTGGATGGTTTTGCCACCGAAGGctaaaagataaaagattaTTGAAAGATGAAGCTTGTACTAATGGGAGACAAGATATTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAGGCATCTTGATCCCAAAGAGGTTGAGAGTCGTGGTCGTTATAGTAATGATATTTTAGCTGCAGATATGGCTCATGAACGTAGGAATCCTTATTCAGAAAATGTTAGTTCAATGGATGACACGTCATCTGAAAGTAGCTCATCTTTGCAAGATCAGGATTCATATGGTGCTGACCCTTCTAGATATCTAATGCCTAATGGAGCTCTGCCTCCAATAAATCCCAAGGGTGCTATTAAAATGAGATATAAACCATCAGGTTATCTGAAAGTGAAGGGAGAGATAGAAAACCCTGCTATAACTGCTGTTAAGAAGCTATTAGGAAGGAATTATCGGGAAGATGGTCCACTACTTGGTATAGAATTTGATCCAATTCCTCCAGGGGCATTTGAGTCTCAAATGGATCCTGTTCAAGAACCATACTATAATGCAAATCCTGCTCTTCCCAACTCTCCAGAAAGTTATGCTGTGAAAAGGCAACCCAGTCTTAGCTCTAGATATGATTTGTATAATACTAAATTTAGTTCCCAAGATTCACATATGGAAGGACCAGATCCCTCGGACTTCCAGGATAATAAATCTCGCCACAATTCAAAGCAAAGGCTGCCTTTATGCAGTTATACCAATCCCGTGCCTCGTAGAAACTCTTCACTGGATTTGTACGAACATTCTACTGGAGAAGCATCTGCTTATAATAGCAATAAGAATCATCGAGTTGGCACTAAGCACGGCGTTGAAGGGATGAAATCTGATTCCGCTTCTAACCATAGTGATCACTATGAAGGAATTGCCAGAACCCCGACAGACTGGATGATGCATGGCTATGATAATGTTAATTTGACGAATGTGCAGAGGAGTGAATATGTAAAATCGAAGCCTTCAAATTCAATCAGTAATGCTTGTGTCTCCATGGAGACCAAAGATAGAGGGCCAACTGCTAGGATGGAAAAGAAGTCTAGTGGAGATAGAAAAGCAAGAAGACAATATGATGATTCAGATGAATTAGGAATGCTATCAAATGAAATCATGTTCGCACAACGTGGTGTTGACCTACCTCTCCAACATAATGTTAAACAAGATTCTGTTGCCGAGATGCAACCACGGAAAAGTCAGAGGTGCATGTCTGTGCACTGTGCTTGTGTTTCCTCTTTTTGGTGTCCCACTTTGATTGATAATTTCTTAGTGGATTATCTGTTAGCATTTATTTTCATGATCGAGCTTTAA 1545 0.3929 MQSDENKVAVEKNKKRKLKTPAQISALEKFYIEHKYPTEEMKLELAEELGLTEKQVSGWFCHRRLKDKRLLKDEACTNGRQDISSGVIQDRGSGLGQDSCGSTKHGDYRHLDPKEVESRGRYSNDILAADMAHERRNPYSENVSSMDDTSSESSSSLQDQDSYGADPSRYLMPNGALPPINPKGAIKMRYKPSGYLKVKGEIENPAITAVKKLLGRNYREDGPLLGIEFDPIPPGAFESQMDPVQEPYYNANPALPNSPESYAVKRQPSLSSRYDLYNTKFSSQDSHMEGPDPSDFQDNKSRHNSKQRLPLCSYTNPVPRRNSSLDLYEHSTGEASAYNSNKNHRVGTKHGVEGMKSDSASNHSDHYEGIARTPTDWMMHGYDNVNLTNVQRSEYVKSKPSNSISNACVSMETKDRGPTARMEKKSSGDRKARRQYDDSDELGMLSNEIMFAQRGVDLPLQHNVKQDSVAEMQPRKSQRCMSVHCACVSSFWCPTLIDNFLVDYLLAFIFMIEL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1719 514 Gene3D - 3 84 - -
Sto9g1719 514 CDD homeodomain 14 69 IPR001356 GO:0003677
Sto9g1719 514 MobiDBLite consensus disorder prediction 282 318 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 103 121 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 87 176 - -
Sto9g1719 514 Pfam Homeodomain 14 69 IPR001356 GO:0003677
Sto9g1719 514 SMART HOX_1 12 74 IPR001356 GO:0003677
Sto9g1719 514 MobiDBLite consensus disorder prediction 291 305 - -
Sto9g1719 514 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 482 - -
Sto9g1719 514 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Sto9g1719 514 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Sto9g1719 514 MobiDBLite consensus disorder prediction 416 437 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 237 269 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 142 163 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 410 437 - -
Sto9g1719 514 MobiDBLite consensus disorder prediction 251 269 - -
Sto9g1719 514 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1719 Sto-Chr9 21609055 21611918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1719 3 430 Homeobox Transcription Factor Family AT4G03250 42.793 2.08e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto9g1719 Homeodomain 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1719 - - gmx:100805913 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1719 9 21609055 21611918 Sto9g1719 9 21609055 21611918 ECH