Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1716 TTGCCTTCCGATTCTGGTGCTTTTGCCGATTGGGCAGCTTCCTCCGCTGCCCGCGCTGCCCCAGCCGACGAACTCTCCCTCGGCTTCAATGCGGGGCCCACAGCATCAGCCCACGGCGCGGGACACGCCTCCGGAATGTGGCCCGCCGCGGCGGCTAGGTCAATCAATTACGGTCTCACGCCGGAGATGGGCGGCATGCTCGGCCTGCGCGACCTGTTCGTCGTCGCCGCGCCGTCGTCGTCGTTCcataaccaccaccaccaccatcaccacGATCCCTCCGCCGTCGCCGATCCCGCGAATCAAGCCGCCACCGCGCTCGGCGTCGGCGTCATCCCCCTCCTCACCGCGACGCCGCCGTGCATCGAGAACGAGTTGATGACGACCAATCGGAGCGGCGGCGGACGCGGAATTCAGCTCTGGCAGCAAGAACAAGACTCCGACGAGCAAGGGCAGTACCTGAAGAAACAAGGCTCCGCGACAGCGACAACAACAACGGCGCCCATGTTCGAGCTGAACGAGGATTTCGTTCAGAACGAGAATAGCCTGAGCGTGTCGGGCGGCGGCGGAACGACGACGTGTCAGGACTGTGGGAACCAAGCCAAGAAGGATTGCTCCTACAGGAGGTGCAGGACTTGCTGCAAGAGCCGGAATTACGATTGCCCTACTCACGTGAGGAGCACGTGGGTCCCCGAGGCACGCCGGAGAGAGCGGCGCCTCATGGCGGCTGCGGCCGGCGGCGGAGGATCTAGTGGGGCCACTTCCGGTGGTTCCAAGAAGCCCAGACTCGTCACTTCTCACCAGCAACAACAAACCGCAACAACTTCTCACACTTCCACTTCTAATACCACTCCTCCTAGAAGCTTCGATACTAGCTCTAGCCATCAAGATGCCGGTTTCAAGGAGCACTTGCCGGGTCAAGTGCGGGCGCCGGCGGTGTTCAAGTGTGTCCGTGTGACGGCCGTGGACGACGGGCAAGACGAAATTGCGTATCAGGCGGTGGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTTTGTATGATCAAGGGGTTGAGAGTGGTAGAGATCATGTTTATCCTAATCTATCCGAGCTTCATTTGGGCGGCGGCACCGGCAGCAGTGGCGGCGGTGGTGACGGGAGAAATGgggcttcatcttcttctccaatGTTGGATCCTTCTGATGTTTATGCAGGTGGTGGAGGATTGCTTGGAGGTTCATCCTATGATCTCATAGCCATTGTGTAA 1248 0.5785 LPSDSGAFADWAASSAARAAPADELSLGFNAGPTASAHGAGHASGMWPAAAARSINYGLTPEMGGMLGLRDLFVVAAPSSSFHNHHHHHHHDPSAVADPANQAATALGVGVIPLLTATPPCIENELMTTNRSGGGRGIQLWQQEQDSDEQGQYLKKQGSATATTTTAPMFELNEDFVQNENSLSVSGGGGTTTCQDCGNQAKKDCSYRRCRTCCKSRNYDCPTHVRSTWVPEARRRERRLMAAAAGGGGSSGATSGGSKKPRLVTSHQQQQTATTSHTSTSNTTPPRSFDTSSSHQDAGFKEHLPGQVRAPAVFKCVRVTAVDDGQDEIAYQAVVKIGGHVFKGFLYDQGVESGRDHVYPNLSELHLGGGTGSSGGGGDGRNGASSSSPMLDPSDVYAGGGGLLGGSSYDLIAIV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1716 415 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 193 235 IPR006510 -
Sto9g1716 415 MobiDBLite consensus disorder prediction 251 295 - -
Sto9g1716 415 Pfam Domain of unknown function (DUF702) 191 352 - -
Sto9g1716 415 MobiDBLite consensus disorder prediction 364 392 - -
Sto9g1716 415 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 303 351 IPR006511 -
Sto9g1716 415 MobiDBLite consensus disorder prediction 243 299 - -
Sto9g1716 415 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 408 IPR007818 GO:0003700|GO:0006355
Sto9g1716 415 MobiDBLite consensus disorder prediction 378 392 - -
Sto9g1716 415 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1716 Sto-Chr9 21548550 21550900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1716 1 396 C2H2 Transcription Factor Family AT5G12330 51.456 1.88e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto9g1716 DUF702 2.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1716 - - gsj:114385228 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1716 9 21548550 21550900 Sto9g1716 9 21548550 21550900 ECH