Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1608 ATGTCAAGTGGAGCAACGCACTGGTGTTATACATGCCACTTGCCAGTCATACCTGAAGGGAGAGATTTCATTTGCCCTCACTGTTATGGGGGCTTTGTGCAAGAACTAAATGAAATACAAAGAAATGCACGCCAAGATGCTGTTTCACCACAGATGGAAGAGTTTCATCAAGCACCGGACCTTTTTGATGCTATACATGCTTTTGTGGAGAGGAGAGGCTCAGAACCAAGATTTGGGGTTATAGAAGCAATTGATACTCTCAGGAGGCATAGAATGGCTGGACGAAACCCAAACTTAGATGTTAGAGGGCGATCTGGTTCTACTGCAGTTCCTGAACAGAGTTGGGGGGTTATTAGTTCTGGTCCTTTTTTGATACTTCATGGTCAAGTTCCTGGATTCACCTTGACTAATGGTATTCCTAGAGGCGTTCTTAGGCGTGTTGACATTGGTGACCACTTTGTGGGCACTGGACTGGAAGAATTTATTGAACAGCTCACCATGAATGATCGGCAAGGCCCAGCACCTGCGTCACGTTCTTCAATTGATGCAATGCCAACTATTAGGATCACACGGGCACATCTTCGCTCTGACTCTCACTGTCCAGTTTGTCAAGACAGATTTGAGCTAGGCTCTGAGGCTAGGGAAATGCCATGTAATCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCCGTTTGCCGTGTTCAGCTGCCACCTCATGGTCATGTTAGTTCTCAAGGGAATCAAAATTTGGGAGGAAGGAATGATAACAGTAATGCTGAAAATGATAGCTCCAGGGGTAGGGAGCATAGTCAGCCAAGCCAAGGAAGGAGAAATCCATTCTCTTTTTTATGGCCATTCCGTTCTAGTTCAAACACTGCTGAGACGCCAGAGTCCTTTACAAAGAAGCTGTTCCAGCACTAA 945 0.4529 MSSGATHWCYTCHLPVIPEGRDFICPHCYGGFVQELNEIQRNARQDAVSPQMEEFHQAPDLFDAIHAFVERRGSEPRFGVIEAIDTLRRHRMAGRNPNLDVRGRSGSTAVPEQSWGVISSGPFLILHGQVPGFTLTNGIPRGVLRRVDIGDHFVGTGLEEFIEQLTMNDRQGPAPASRSSIDAMPTIRITRAHLRSDSHCPVCQDRFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVQLPPHGHVSSQGNQNLGGRNDNSNAENDSSRGREHSQPSQGRRNPFSFLWPFRSSSNTAETPESFTKKLFQH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1608 314 SMART ring_2 200 240 IPR001841 -
Sto9g1608 314 SUPERFAMILY RING/U-box 180 247 - -
Sto9g1608 314 MobiDBLite consensus disorder prediction 248 289 - -
Sto9g1608 314 Pfam Ring finger domain 199 241 IPR001841 -
Sto9g1608 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 301 - -
Sto9g1608 314 PANTHER OS03G0351800 PROTEIN 1 301 - -
Sto9g1608 314 MobiDBLite consensus disorder prediction 248 267 - -
Sto9g1608 314 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Sto9g1608 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Sto9g1608 314 CDD RING-H2_RNF126_like 200 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1608 Sto-Chr9 20418937 20420154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1608 147 258 C3H Transcription Factor Family AT5G01980 37.719 2.31e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1608 K11982 - gmx:100813674 459.529