LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g1583	ATGCCGAAGAAGCGGAAGCTCCCCCCATCATCCGAACCACAATCTACCACCGCCGTCGCTGAACCGCAACCTCCCGAGCAGCAAATTCACTCGGAGACCGAAGCAGCTCTCAACGAGCAGCAGCACCAAGAACCACAAACTATGGCTGTCGATGGCGATGGCGATGGTGGTAATACCCTAGAACAACAGGAGGAAGTGCAGGATGGAGAGAACCCTGAAGAGCAAGAAGGCGGTGAGCAACTTGAGACTGCTGAAGCTGCCAACGATGAAGCCCTAACTGAATCGGCTCAGGCTGAAGAAGGTACCGAGAATGAAGACGAAGAAGGGGAGGATTTGGTTGAGGAGACAGTGGACAAGCTTCTTGAGCCCTTTACGAAGGATCAGTTGTACTCTCTTGTTAAGCAAGCTGTGGAGAAGCACCCAGGTTTCATGGAGAACATTCGTCAGCTGGCCGATGTGGACCCTGCTCACCGTAAAATCTTCGTCCATGGACTTGGGTGGGATGCCACTGCGGAAATACTTACTAGTGTGTTTGGGAAGTATGGTGAGATTGAGGATTGCAAGGCTGTAACGGACAAGCTCTCTGGGAAATCCAAGGGTTATGCTTTCATCCTGTTTAAACACCGAACGGGTGCTCGTAAGGCGCTGAAGCAGCCACAGAAGAAGATTGGGAACCGCATTACGTCGTGTCAATTAGCGTCAGCTGGACCTGTCCAGGCTCCTCCACCTACGGCAGCAGCTGTGTCTGTATACACTCCAAAGAAGATCTTTGTGAGCAATGTGGGTCCGGACATTGATCCCCAGAAGTTGCTTGAGTTCTTTAAGCAGTTTGGGGAGATAGAGGAAGGTCCATTGGGTCTTGATAAGCAGACAGGGAAGCCTAAAGGGTTTGCATTTTTTGTATACAAGTCAGCAGAAAGTGCTAAGAAAGCTTTGGATGAGCCACACAAGAACTTTGAGGGGCATACATTGTATTGTCAGAAGGCAGTTGATGGTCCTAAGGGAAATAAAGGATATCACCAACAGCAGCATCAGCACcattctcatcatcatcatcagcctCATCACCACACAAGAAAGGAGAAGAATAAGTATCCATCTAGATCCAGTGGCCCAGGACCTGGACACCTGATGGCACCATCAGCTCCAGGCCCTGCTGTGGGTTTCAATCCAGGAGTGCCTCCAGTACAAGGCCTGAATCCAGCGCTCGGGCAAGCCTTGACAGCTTTACTTACAACTCAAGGAGGTGGACTAGGGCTTGGTAATTTGCTTGGAGGCATTGGTGGTGCCCCTGTAAACCAGGCTGGCCCACCTGCTGGATATGGTAACCAGGCTCCTGTGAGCTATGGGAACCAACCTGGGATGCAACCAGGATACCAGAATCCACAAATGGGGCAGAGCGGTGGTGTTAGGCCTCACCCTGGTGCTGGCCCTTCTTACATGGGAATTGAGATCCTTAATGCGGTAGGCATAAAGTTGGTTGAAATTGGAACTGGTGACGTTAATGCTTTAGACTCCCTATGCCCTCATAGATGCATCAATCATTTAGTTTTGGACTCTGGTGATTCTTCTGAAGTTCCAGGCACTATTCAAATGCATCTTTTCATAAAACCATATTATATTTTCTTGAAAGTTAAATGCAAGAATCTGTTCATAGCTTCTGTCATCTGCTTCCTGATGGAGTTTGAAACCTCTATTCACATCCAAGGCAAAGTCGTTAAGATGTTGCATTCTGGAGGTCATAATGGTATTTCATGGCTCAAAGAAGGGGGTCTATGGCTTATGAGGTTGTTACCATGCAAGAATGGGCACATTTGCatcttcaccttcaaccttcaggaaggtattctagcattgtcatgTTTATGA	1869	0.4698	MPKKRKLPPSSEPQSTTAVAEPQPPEQQIHSETEAALNEQQHQEPQTMAVDGDGDGGNTLEQQEEVQDGENPEEQEGGEQLETAEAANDEALTESAQAEEGTENEDEEGEDLVEETVDKLLEPFTKDQLYSLVKQAVEKHPGFMENIRQLADVDPAHRKIFVHGLGWDATAEILTSVFGKYGEIEDCKAVTDKLSGKSKGYAFILFKHRTGARKALKQPQKKIGNRITSCQLASAGPVQAPPPTAAAVSVYTPKKIFVSNVGPDIDPQKLLEFFKQFGEIEEGPLGLDKQTGKPKGFAFFVYKSAESAKKALDEPHKNFEGHTLYCQKAVDGPKGNKGYHQQQHQHHSHHHHQPHHHTRKEKNKYPSRSSGPGPGHLMAPSAPGPAVGFNPGVPPVQGLNPALGQALTALLTTQGGGLGLGNLLGGIGGAPVNQAGPPAGYGNQAPVSYGNQPGMQPGYQNPQMGQSGGVRPHPGAGPSYMGIEILNAVGIKLVEIGTGDVNALDSLCPHRCINHLVLDSGDSSEVPGTIQMHLFIKPYYIFLKVKCKNLFIASVICFLMEFETSIHIQGKVVKMLHSGGHNGISWLKEGGLWLMRLLPCKNGHICIFTFNLQEGILALSCL	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g1583	622	CDD	RRM_RBM24_RBM38_like	254	329	-	-
	Sto9g1583	622	Coils	Coil	81	101	-	-
	Sto9g1583	622	SUPERFAMILY	RNA-binding domain, RBD	239	352	IPR035979	GO:0003676
	Sto9g1583	622	MobiDBLite	consensus disorder prediction	340	363	-	-
	Sto9g1583	622	MobiDBLite	consensus disorder prediction	1	112	-	-
	Sto9g1583	622	PANTHER	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	1	471	-	-
	Sto9g1583	622	SMART	rrm1_1	159	231	IPR000504	GO:0003723
	Sto9g1583	622	SMART	rrm1_1	255	327	IPR000504	GO:0003723
	Sto9g1583	622	MobiDBLite	consensus disorder prediction	330	392	-	-
	Sto9g1583	622	Gene3D	-	57	240	IPR012677	-
	Sto9g1583	622	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	158	235	IPR000504	GO:0003723
	Sto9g1583	622	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	254	332	IPR000504	GO:0003723
	Sto9g1583	622	SUPERFAMILY	RNA-binding domain, RBD	139	236	IPR035979	GO:0003676
	Sto9g1583	622	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	160	226	IPR000504	GO:0003723
	Sto9g1583	622	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	256	324	IPR000504	GO:0003723
	Sto9g1583	622	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	1	471	-	-
	Sto9g1583	622	MobiDBLite	consensus disorder prediction	9	47	-	-
	Sto9g1583	622	MobiDBLite	consensus disorder prediction	66	80	-	-
	Sto9g1583	622	Gene3D	-	244	370	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g1583	Sto-Chr9	20181596	20186152	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g1583	254	333	C2H2 Transcription Factor Family	AT2G19380	35.000	3.19e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g1583	K12741		-	gmx:100783742	543.502