Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1525 ATGGCCCATAGGTTGTTGAGGGACCATGAAGCCGATGGATGGGAGCGCTCTGACTTTCCCATCATCTGCGAATCATGCCTTGGTGATAACCCGTATGTTCGTAtgACAAGAGCCGAGTATGATAAAGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTTAGATGGAGGCCTGGTCGAGATGCGAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTTTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTGCGAGATACTGCTCTCAGCATCAGTTCCCATGATTCCATTCCAAAAAGTGATGTTAATCGAGAGTATTTCGCGGAAGAGCATGATCGCAAGGCACGAGCTGGCATAGATTATGAATCCTCATTTGGAAAGGCACGCCCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAATAGGGCACATATATGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCATATAGGCACGAGATGCCTGTAACTGGGGAGTTGTCACAACAAAATATCAAAGACCGTTACTACGGGGTGAATGATCCGGTGGCATTGAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTAGAGCCTCCTGAGGACGAGAGCATTAAAACTCTTTATGTAGGTGGCCTTGATGCTAGGGTCAGTGAGCAGGACCTGCGCGATAACTTTTACGCCCATGGTGAAATAGAATCCATTAAGATGCTGATGTGGGGTAGACCACAGACATCAAAACCTGACTCTGAAAGCTCTGATCAAGCAAGACAGCAAGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCGCAGCAGCAGAACCAGGACCAAACCCAAGGCGTGCATTACTATAACGCTCCACCACCTCCTCAGCAAGACAGAAGCTACTATCCATCAATGGATCCACAAAGAATGGGTGCTGTTATTCCATCCCAAGATGGTCCTCCTGGTGGGGCTACTGGGTCTGGAGAGATCAGACCGAATTCGGAGAAGCAGCAAATGCAGCATTATCCCCATCCAATGATGCCTCCACCACCACCTGGGCAATATCATCATCAATATTATCCCCCTCCGCCTTACGGGTATATGCCACCAGCACCGCATTATCAACAGTACCCACCACCGCCTTACAACCCTGCAGTTGCTCCATCTCAGCCACCGGCTGGAAATCAGCCCTATCAGCATTCTATGCAGCCAGGGTCATCGGCTCACGCTGGGTCTGCTCCAACAGAATCTGGCACACCAGCCTCAGGGTCACAGCAGTAG 1344 0.4799 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDSIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDESIKTLYVGGLDARVSEQDLRDNFYAHGEIESIKMLMWGRPQTSKPDSESSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVHYYNAPPPPQQDRSYYPSMDPQRMGAVIPSQDGPPGGATGSGEIRPNSEKQQMQHYPHPMMPPPPPGQYHHQYYPPPPYGYMPPAPHYQQYPPPPYNPAVAPSQPPAGNQPYQHSMQPGSSAHAGSAPTESGTPASGSQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1525 447 SUPERFAMILY RNA-binding domain, RBD 221 261 IPR035979 GO:0003676
Sto9g1525 447 Gene3D - 149 208 - -
Sto9g1525 447 MobiDBLite consensus disorder prediction 267 284 - -
Sto9g1525 447 Pfam Torus domain 150 194 IPR032297 -
Sto9g1525 447 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Sto9g1525 447 MobiDBLite consensus disorder prediction 297 447 - -
Sto9g1525 447 Gene3D - 211 272 IPR012677 -
Sto9g1525 447 MobiDBLite consensus disorder prediction 413 447 - -
Sto9g1525 447 MobiDBLite consensus disorder prediction 364 412 - -
Sto9g1525 447 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 260 431 IPR039171 GO:0003723
Sto9g1525 447 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 260 IPR039171 GO:0003723
Sto9g1525 447 MobiDBLite consensus disorder prediction 297 311 - -
Sto9g1525 447 MobiDBLite consensus disorder prediction 264 285 - -
Sto9g1525 447 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 260 431 - -
Sto9g1525 447 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 260 - -
Sto9g1525 447 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Sto9g1525 447 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto9g1525 Torus 7.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1525 K12872 - gmx:100779917 718.768