Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1501 ATGGCCGGGACCTTGGCGCCGGAGCAGAGCCCGCTGGTGTCGCCGACGACGTCGAGGTACGTGACGGAGACGCTGAATGGTTCGCATAAGTTCGTGATTGAAGGGTATTCGTTGGCGAAGGGGATGGGAGTCGGGAAGTACATTGCGAGCGATTTGTTCATGGTGGGAGGTCATCAATGGGCGATTTACTTCTACCCTGACGGCAAGAATACCGAGGACAATACTGCCTACGTTTCGGTTTTCATCGCCCTGGCAAGCGATGGAACAGATGTGAGGGCATTGTTTGAGCTCACGCTTCTGGATCAGAGTGGGCAAGAGAAGCACAAGGTTCACAGCCATTTTGATCGGTCGCTTGAGGGCGGTCCATATACGCTCAAGTATAAGGGTAGTATGTGGGGATACAAGCGGTTTTTTAGACGTACTTTGCTTGAAAGCTCCGATTACCTCAAAGATGATTGCCTAAAATTCAACTGTACAGTTGGAGTTGTGGTTTCAGCTGTAGATTGTCCACGACTGACCTCAGTTAAGGTTCCTGAATCTGACATTGGTGCACACTTTGGCATGCTATTGGAAAGTATGGAAGGTTCAGATGTTACTTTTAATGTGGCCGGGGAAAAGTTTGCTGCTCATAAGTTGGTGTTGGCTGCTAGATCCCCTGAATTTCGATCTAAATTATTTGATGGTTTAGATGAGGACGAACAGGAGATTGTTGTAACAGATTTAGAACCTAAGGTTTTCAAGGCCATGCTCCACTTTATCTACCGGGATGCCCTCACAGATGTGGTGGACATGGTTCCATCAACCTCATCTAGTGAATCCGTAGTGTCTGAGACATTAACAGCAAAGTTATTAGCTGCTGCAGATAGTTATGGCTTGGAGAGGCTTAAACTGATGTGTGAGTCTCGTATCTGCAAAGACATCTGTGTAAATTCTGTAGCCGACGTATTAACATGGGCTGACCATTGCCATGCTGCAGAGTTAAAAGCTGTTTGCTTAAAATTTGCTGCGCAGAATATAGCAGCTGTCATGAGGTCGGACGGATTTGAGTTTATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATGCTGAAGACAATTGCAGGGTGTGAGAGTGATTATTGCAGTACTGGAGAGAAATCCCGGAGCGTGTGGGCCCAACTTTCCGATGGTGATGACTCAAATGGTAGGAGGGTCAGGCAGAGAACCTGA 1209 0.4731 MAGTLAPEQSPLVSPTTSRYVTETLNGSHKFVIEGYSLAKGMGVGKYIASDLFMVGGHQWAIYFYPDGKNTEDNTAYVSVFIALASDGTDVRALFELTLLDQSGQEKHKVHSHFDRSLEGGPYTLKYKGSMWGYKRFFRRTLLESSDYLKDDCLKFNCTVGVVVSAVDCPRLTSVKVPESDIGAHFGMLLESMEGSDVTFNVAGEKFAAHKLVLAARSPEFRSKLFDGLDEDEQEIVVTDLEPKVFKAMLHFIYRDALTDVVDMVPSTSSSESVVSETLTAKLLAAADSYGLERLKLMCESRICKDICVNSVADVLTWADHCHAAELKAVCLKFAAQNIAAVMRSDGFEFMKEKCPWLQSEMLKTIAGCESDYCSTGEKSRSVWAQLSDGDDSNGRRVRQRT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1501 402 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Sto9g1501 402 ProSiteProfiles BTB domain profile. 196 258 IPR000210 GO:0005515
Sto9g1501 402 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Sto9g1501 402 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 10 379 - -
Sto9g1501 402 CDD MATH 27 160 IPR002083 GO:0005515
Sto9g1501 402 Pfam BTB/POZ domain 189 305 IPR000210 GO:0005515
Sto9g1501 402 SUPERFAMILY TRAF domain-like 23 167 - -
Sto9g1501 402 SUPERFAMILY POZ domain 174 305 IPR011333 -
Sto9g1501 402 SMART math_3 31 143 IPR002083 GO:0005515
Sto9g1501 402 Gene3D Potassium Channel Kv1.1; Chain A 172 301 IPR011333 -
Sto9g1501 402 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 10 379 IPR045005 GO:0016567
Sto9g1501 402 SMART BTB_4 196 307 IPR000210 GO:0005515
Sto9g1501 402 CDD BTB_POZ_BPM_plant 182 304 - -
Sto9g1501 402 Gene3D - 306 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1501 Sto-Chr9 19294939 19302952 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto9g1501 BTB 7.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1501 K10523 - gmx:100806769 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g1501 9 19294939 19302952 Sto9g1501 9 19294939 19302952 ECH