Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1474 ATGTCCTCCAAATTTTGTCGCCTTCTCCGATTCATCCTTCATCCCTTCTCTGCACTTCCATCGCTAACAACGTTTTCGTCCATCATCGTGCTTGCTGAAACCCTGTTGTTGCCGGCGTCTGCTGATCACTTTGCATCGGCTTCGTCGTTTTCCACTCAGCATCTCCATCGTCCTCTGCTTCCGCCGCTCCATCGTCGCCGTTCTCATCGTCACCCGACGGCCGCTGATAGCCGCTCGTTCCGTCACTTGCTGACCCTTGCTTGTCATTCGTTCCGTCACTTGCCGTCACGCTGGTCGTTTTTGTTAGTGGTAGAAGTAGTTCTTTATCACGAGGGTGTTGCTATAGCAGAATCAAGTTCAGTAACGGAGTTGAAACGGAAGGAGAAACAGAAGAAGAAGGCCAAGTCTGGCGGCTTTGAGTCCTTGGGTTTCATCCCCAATGTCTTCAGAGGAATCAAGCGCAAGGGCTATAAGGTGCCCACTCCAATTCAGAGGAAAACTATGCCCATCATTCTTTCTGGCGCTGATGTTGTTGCCATGGCTCGTACTGGGTCTGGTAAGACCGCTGCATTTCTCTTGCCCATGCTTCAGCGTTTGAACCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCCACGAGAGACTTGGCGCTTCAGACTTTTAAGTTCACCAAAGAACTTGGCCGCTTCACAGATCTTCGTGTTAGTTTATTAGTTGGTGGTGATAGTATGGAAAGCCAGTTTGAGGAATTAGCTCAAAATCCTGACGTTATAATTGCAACACCTGGTAGACTTATGCACCATTTGTCTGAAGTTGATGACATGTCACTGCGGACTGTCGAATATGTTGTCTTCGATGAGGCAGATAGTTTATTTGGCATGGGTTTTGCTGAGCAGTTGCATCAAATTCTTACACAGCTGGGTGAGAACCGTCAGACCTTGCTCTTCAGTGCTACGTTACCCAGTGCCCTTGCTGAATTTGCTAAGGCTGGTTTGCGTGACCCTCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGTCCTGATCTGAAGCTAGCCTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTACTGTATTTGATTAGGGAGCAAATTAGCTCAGATCAGCAGACACTGATATTTGTATCCACAAAACATCATGTTGAGTTTCTCAACACCTTGTTTAGGGAAGATGGTATTGATCCGTCTGTATGTTATGGTGACATGGACCAAGATGCACGTAAAATTCATATATCAAAATTCAGGGCGAGGAAGACTATGTTGTTGATTGTGACAGATGTTGCTGCTCGGGGCATTGACATTCCGTTACTTGATAATGTTATTAATTGGGACTTCCCCCCAAAGCCTAAAATATTTGTTCATAGAGTTGGAAGGGCTGCAAGGGCAGGTCGTACAGGTACTGCCTATTCTTTTGTGACTTCAGAGGATATGCCTTACCTTTTGGATCTTCATTTGTTTCTATCAAAACCAATCAAAGCTGCTCCAACTGAAGAAGAGGTCCTGCAGGATGTCGATGGAgtattttctaaaattgatcAGGCAATAGAAAAAGGAGAAACTATTTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCTGACAGAGTTCGAGAAACTATTGATGGTTCTGCGGAACTAATATCATTGCAGAAAACCTGTCAAAATGCATTTCGTTTATATTCAAAGACAAAACCCTTACCTTCAAAGGAGTCTATAAGAAGGGTAAAGGATTTACCCCGTGAGGGGTTGCATCCAATTTTCAAGAGTGTATTGGAAACTGGGGAGTTAATGGCACTTGCTTTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACCGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTGAAGGGATCTTCTAGTCAATGGGTTGATGTGATGAAGAGAAAAAGAGCCATTCACGAGAATGTTATAAATTTGGTTCATGAGCAAAGATCTAAGAGTAATGCGGATAAGGAGGAACATCAATTGGATATCGTTCCCTCAACGGAGAATGGGAAAAAAGCAGCTTCTGGTTCTAAAAGAAAGGCTCAAAGTTTCAAGGATGAGGATTACTACATAAGTTCAATACCACAAAATCATCACACAGAAGCAGGCCTTTCAGTAAGGGCTAAGGAAGACTTTTCTTCAAATAGATTGGAATCAGCTGTCCTAGATCTAGTTGCAGATGACAGTTCAGGCATTCAGAAACAAAAATCTGTATATCATTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGAGCGTGTTGCTGCCAATGGAAAGATAAAGACAGAGGGTGGTGCGAAAGTGAAGGCCACCAAGACTGGTATATACAAGAAGTGGAAAGAACGCTCACATAATAAGATAGCTCGCAAGGGGACAAATGATGATGGTGATTCTCACGGATCCACTAGTTTTGCAGGATACTCTCGGGGTGGTCCAAGAAAATTCAAAGGCAGCAAGAAGCAGCAGCATTCAGTCCCCAACTCTCATGTACGTTCAGAAATCAAAGATCTAGAACAAATTCGGAAGGAGAGGCAGACAAAAGCCAATAAACTTTCTTATATGAAGAGCAAGTCTTCCAAAAAGGGTAAACAATTTGGTAGAAATGGGAAAAAAGGAAAGGCTGGTGGAGGACATGGGAGAAAAGGTAAGGGAAAGTAG 2727 0.4349 MSSKFCRLLRFILHPFSALPSLTTFSSIIVLAETLLLPASADHFASASSFSTQHLHRPLLPPLHRRRSHRHPTAADSRSFRHLLTLACHSFRHLPSRWSFLLVVEVVLYHEGVAIAESSSVTELKRKEKQKKKAKSGGFESLGFIPNVFRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLLPMLQRLNQHLPQGGVRALILSPTRDLALQTFKFTKELGRFTDLRVSLLVGGDSMESQFEELAQNPDVIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFREDGIDPSVCYGDMDQDARKIHISKFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMPYLLDLHLFLSKPIKAAPTEEEVLQDVDGVFSKIDQAIEKGETIYGRFPQKVIDLVSDRVRETIDGSAELISLQKTCQNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKSVLETGELMALAFSEHLKKFRPKQTVLEAEGEAAKSKHLKGSSSQWVDVMKRKRAIHENVINLVHEQRSKSNADKEEHQLDIVPSTENGKKAASGSKRKAQSFKDEDYYISSIPQNHHTEAGLSVRAKEDFSSNRLESAVLDLVADDSSGIQKQKSVYHWDKRSKKYIKLNNGERVAANGKIKTEGGAKVKATKTGIYKKWKERSHNKIARKGTNDDGDSHGSTSFAGYSRGGPRKFKGSKKQQHSVPNSHVRSEIKDLEQIRKERQTKANKLSYMKSKSSKKGKQFGRNGKKGKAGGGHGRKGKGK 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1474 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 493 IPR027417 -
Sto9g1474 908 MobiDBLite consensus disorder prediction 667 700 - -
Sto9g1474 908 MobiDBLite consensus disorder prediction 805 908 - -
Sto9g1474 908 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Sto9g1474 908 MobiDBLite consensus disorder prediction 805 819 - -
Sto9g1474 908 MobiDBLite consensus disorder prediction 852 873 - -
Sto9g1474 908 Pfam Helicase conserved C-terminal domain 364 475 IPR001650 -
Sto9g1474 908 MobiDBLite consensus disorder prediction 667 685 - -
Sto9g1474 908 Gene3D - 110 344 IPR027417 -
Sto9g1474 908 SMART DBP10CT_2 743 805 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Sto9g1474 908 CDD SF2_C_DEAD 360 484 - -
Sto9g1474 908 Gene3D - 356 582 IPR027417 -
Sto9g1474 908 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 117 898 - -
Sto9g1474 908 CDD DEADc_DDX54 137 342 - -
Sto9g1474 908 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 341 IPR014001 -
Sto9g1474 908 Pfam DBP10CT (NUC160) domain 743 804 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Sto9g1474 908 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 514 IPR001650 -
Sto9g1474 908 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 117 898 - -
Sto9g1474 908 SMART helicmild6 394 475 IPR001650 -
Sto9g1474 908 SMART ultradead3 156 363 IPR014001 -
Sto9g1474 908 MobiDBLite consensus disorder prediction 877 908 - -
Sto9g1474 908 Pfam DEAD/DEAH box helicase 161 327 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1474 Sto-Chr9 19020260 19029970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1474 139 508 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 2.29e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1474 K14808 - gmx:100806274 1237.25