Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1413 ATGTATCTCTCAGCAAGAATCCTTTTTGTGATAGTAATCACAATAATTGGTGGCAGGTACTCCTTACCTTTGAATTGGTGCAGCATCAGTCCAGCTGCTAGGTGTCGGCGTGGCAGTGTCTCCAGCAGTAGGGATGATGTTCTCTGTTGTAGAATCAGAACCATCCTCTGCTGCGGAACCCATGGAACCGAAGCTATCCGTGGCATAGTTCTAAAACTACCAGAGCCATATGAAGCAAAATGGGATCCTAGTGCTTTCTCAAAGATTCCTGGTCTTGTATTACTCATCATATCAAGTGAATTGCGCCTTCCCCGCGGTTTGAACTGTCTTCCAAGAGCATTAAAAGTTCTTGTGTGGAATTCATGTCCCTTGAGTTCTCTTCCACTTGATGTTCCACTCAACGAACTTGTTATCCTTGAGATGCCTAATAGTAAAATGAGTAAACCTTGGAGTGGATTGCAGTTTTTTAATAGCTTGAAATCTCTCAAGTTGAGTCATTCTATTTATCTGATTCAAACTCCGAATTTTAAAGGGGTTCCAAACCTTGAAAGTCTGGATCTTGAAGGCTGTATAAATCTAGGAGAGATTCATCCGTCTCTCGGAATGCTTGAGAAGTTAGTCATACTGAATTTGAAAGGTTGCGAGAATCTTCAGATGCTTCCTGAGTTTGATGAAAGAATGAAATGTCTATCTATCATTGATTTGACGGGCTGCAAGAAACTGGCTTGCTTGCCCAATACCTTCAATAACTTGGCATCTCTCAAAAGTCTCAATCTTTCTGGATGCTCAAAATTTTCTAGGCTTCCAAGCAATTTGATTGAAAATATGGCTTTGGAGGAGCTTGATTTTAGTGATACTGCTATAAGAGAAGTACCTACATCCATTGGTGGATTACCAAATCTTAAAGTACTATCATTCCGTGGATGCAAAGCGCCACCCTCAATCTCATGGAAGTCATATATTTCCTTTTCGTGGCTATTTGGTAGGCAGCAAGTTCAAATTCCTATGGGGTTGAGGTTGCCTCCTTCTTTCTCAGGTCTGTCCTCTCTGCAGAAATTGGATCTAAGTTACTGCGATCTGCATGATGAATCAATTCCTAGTGATTTTGGAAGCTTAACGTCGTTGGAAATATTAGACTTGAGTGGAAATAATTTTGTTCACTTTCCTGTAGACAGTATTTCAAATCTTCTACAACTAAGATCTCTTAAGTTTGATTGTTGCCCTAGGCTTCAGTCTTTGCCTAGAATTCCACCAAATTTGGAAACTGTACATACATGGAATTGCCCTTTATTGTAA 1296 0.4028 MYLSARILFVIVITIIGGRYSLPLNWCSISPAARCRRGSVSSSRDDVLCCRIRTILCCGTHGTEAIRGIVLKLPEPYEAKWDPSAFSKIPGLVLLIISSELRLPRGLNCLPRALKVLVWNSCPLSSLPLDVPLNELVILEMPNSKMSKPWSGLQFFNSLKSLKLSHSIYLIQTPNFKGVPNLESLDLEGCINLGEIHPSLGMLEKLVILNLKGCENLQMLPEFDERMKCLSIIDLTGCKKLACLPNTFNNLASLKSLNLSGCSKFSRLPSNLIENMALEELDFSDTAIREVPTSIGGLPNLKVLSFRGCKAPPSISWKSYISFSWLFGRQQVQIPMGLRLPPSFSGLSSLQKLDLSYCDLHDESIPSDFGSLTSLEILDLSGNNFVHFPVDSISNLLQLRSLKFDCCPRLQSLPRIPPNLETVHTWNCPLL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1413 431 Pfam Leucine Rich Repeat 253 275 IPR001611 GO:0005515
Sto9g1413 431 Pfam Leucine Rich Repeat 181 200 IPR001611 GO:0005515
Sto9g1413 431 Pfam Leucine Rich Repeat 374 396 IPR001611 GO:0005515
Sto9g1413 431 SUPERFAMILY L domain-like 71 431 - -
Sto9g1413 431 SMART LRR_typ_2 347 371 IPR003591 -
Sto9g1413 431 SMART LRR_typ_2 251 275 IPR003591 -
Sto9g1413 431 SMART LRR_typ_2 372 395 IPR003591 -
Sto9g1413 431 Gene3D Ribonuclease Inhibitor 80 250 IPR032675 -
Sto9g1413 431 Gene3D Ribonuclease Inhibitor 329 431 IPR032675 -
Sto9g1413 431 Pfam Leucine Rich repeat 348 363 IPR001611 GO:0005515
Sto9g1413 431 PANTHER BNAANNG23130D PROTEIN 195 416 - -
Sto9g1413 431 PANTHER BNAANNG23130D PROTEIN 135 310 - -
Sto9g1413 431 Gene3D Ribonuclease Inhibitor 251 328 IPR032675 -
Sto9g1413 431 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 135 310 - -
Sto9g1413 431 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 195 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1413 Sto-Chr9 18424727 18428732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1413 52 378 WRKY Transcription Factor Family AT4G12020 32.174 1.81e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1413 - - var:108321227 350.132