Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1307 ATGGGTCATCGCAGGCATGAAACAGAGTTTATTGAAAATATTACTGAAGCAGTATGGTCAAAATTACAATCCAAATTGCCACCTGACTTTGATTTTGTGGTCGGAATTGAATCAAGGATAGAGGGAACAAAAGAAATTCAATGGATAGTTCTAAATTCACTTGAACCACATGAAGCATATTGGGATAGAGAAGCCTTCTCAAACATAAGTAACCTTAGATTACTTATCATGTCTGGTGATTTGAACCTTTGTAGTGGTTTCAAATCCTTTCCTCAAGCATTAAAAGTTCTTAGATGGGACAAATATAATTTGGATGCTCTGCCACATGGAGTTCAACTAGATGAACTTGTTGACTTCAAAATGCGACATAGCAAGATAAAACAACTATGGAAAGAAACACAGTTCATGGATTTAAGCCACTGCATTGACTTGACTACATTACCAAATTTTGATGGAATTCCATATCTTGAAAGATTAGTTCTTGAAGGTTGTAAAACCCTTgttgaaattcatcagtcaCTTGGTCAACTCAAGAAGCTCGTGATTGTAAATTTGAGACATTGCACAAGTCTAAAAACCCTTCCTAGGAAACTTGAAATGAACTCTCTTGTGACCTTTATACTCTCGGGCTGCTCAAAAATTAGAAAGCTTCCTGAATTTGGAGAAACTATGGAACGTCTATCCACACTTGATTTAGAGGAGACTTCCGTTATTAGACTACCTGAATCTCTTGCTTTCTTGACAGGCTTGACTACTTTAAATTTAAGGAATTGCAAAAATTTGGTATGCCTTCCCAATGTGATTCAGAATTTAAGATCCATCAAAATTATCGATCTCTCTGGCTGCTCAAAATGTGAAAAGTTGCCAGAAAATTGGAATGAAAACAAGGCTATGGAAGAGCTGGATGTGAGTGGAACTGCTATAAAAGAAGTACCTTCATCCATCTTTCTTTTGGAAAATTTGAACTGTCTATCTTTCCATGGGTGCAAGGGGACATCACCACGCCAGGCTTGGAATTTTCCTATTCCCTTTGGGTGGAAGCGTAAGCTGAACAATCCTTCAATTTCAACGATGCTGATGTTGCCGTCTTCCTCACCAAATCTACCTTTGTTGAAACAACTGGATTTAAGTTATTGCAATCTCAGAGATGAATCACTCCCCAAAGATCTTAACAATTTATCATCACTGGAGGTTTTAGGCTTGAGGGGAAACAATTTTGTTAACCTACCTACTACATTCATTTCTAATCTTTTGAGGCTAACAACACTCCGTTTAGAATATTGCTCAAGGCTTGAAAAATTGCCTGAACTTCCCCAAAATATTAGTGACATTTGGGCAGATGATTGCGCATCAATGGAACCTTTATTAGACACACAACTACTGGGGCTCTTCGCGTCACCAATGTTACAGTGTCTTAAGCAACAAGACTTTGATGGCGTTGTATTAATTATACCAGGGAGTGAAATCCCATCATGGTTTCAAAACCAAAATTGTTTACATCTGGGTACAACAGATATATCATTCACCGCAGACATCCCAGACTATTGTTCTTCAAGTGATTTTTGGGGAATTGTTGGGTGCTTAATTTTTCATGGAGACATGGGCATTACATCTACACCTAATCTTGATGATAGTATTGATTATAAATACTATGGTACTGAAGATACATGGAAAGGTCACTCGGGACTATTTGACATTTATGATCAATACAATTGCAGCCATCAACTTTCAATGTTTTTCTTCCCCTGTAATAATGTTCACATCAAGCAACTTCAATTGGAGTTTTccattaaacaaaaagaaaaatataaaataacaaagtATGGGTGGCGTGTAGTACGCATGGAAGACTTAGAAGCTTGGCGCCAAATGAAGTGTGAAGGAAGTAGCGGCAATAACCGAAACCACAACATCATTGAGATTGCTTCCAACAACAACAATGAGGTCTTAGTTATGCCGTCAGCTGTGGTGGGGACAGTATGTTCATTGGAGCGTGTTTCTAATGCCTGTTCTATTGCAAGAGCTGGTGATAGTGTAGCTATCACATTGAATGGTGTAGATGGAAGTCATGTAATGGCAGGAGGTGTATTGTGCCATCCTGATTTTCCTGTTGAGGTGGCAAAACGCTTGGAGTTAAAGGTTCTTGTGTTGGAGGGAGCAAATCCCATATTGGTAGGCTCGCAGGAGCCAGCCAAAGTTTCAAGACTAGTGTCAGTTCTTGATCCGAAGACTGGGAAGATGACAAAGAAGTGTCCTCGCTGTCTCATTGCAAAACAGAGGGCAGTGATTGAGGTAAGTTTGCAGGAGCCAGTCTGTGTGGTAGAATTCTCCAGCTGTAAAGCTCTTGCAAGGGTGTCTCTAAGAACTTCAGGAAGAACAATTGCCGTTGGACTTGTGACGCGAATAATTGAAGAGCAAGATTAG 2424 0.387 MGHRRHETEFIENITEAVWSKLQSKLPPDFDFVVGIESRIEGTKEIQWIVLNSLEPHEAYWDREAFSNISNLRLLIMSGDLNLCSGFKSFPQALKVLRWDKYNLDALPHGVQLDELVDFKMRHSKIKQLWKETQFMDLSHCIDLTTLPNFDGIPYLERLVLEGCKTLVEIHQSLGQLKKLVIVNLRHCTSLKTLPRKLEMNSLVTFILSGCSKIRKLPEFGETMERLSTLDLEETSVIRLPESLAFLTGLTTLNLRNCKNLVCLPNVIQNLRSIKIIDLSGCSKCEKLPENWNENKAMEELDVSGTAIKEVPSSIFLLENLNCLSFHGCKGTSPRQAWNFPIPFGWKRKLNNPSISTMLMLPSSSPNLPLLKQLDLSYCNLRDESLPKDLNNLSSLEVLGLRGNNFVNLPTTFISNLLRLTTLRLEYCSRLEKLPELPQNISDIWADDCASMEPLLDTQLLGLFASPMLQCLKQQDFDGVVLIIPGSEIPSWFQNQNCLHLGTTDISFTADIPDYCSSSDFWGIVGCLIFHGDMGITSTPNLDDSIDYKYYGTEDTWKGHSGLFDIYDQYNCSHQLSMFFFPCNNVHIKQLQLEFSIKQKEKYKITKYGWRVVRMEDLEAWRQMKCEGSSGNNRNHNIIEIASNNNNEVLVMPSAVVGTVCSLERVSNACSIARAGDSVAITLNGVDGSHVMAGGVLCHPDFPVEVAKRLELKVLVLEGANPILVGSQEPAKVSRLVSVLDPKTGKMTKKCPRCLIAKQRAVIEVSLQEPVCVVEFSSCKALARVSLRTSGRTIAVGLVTRIIEEQD 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1307 807 Gene3D Translation factors 640 702 - -
Sto9g1307 807 CDD HBS1_C_III 703 802 - -
Sto9g1307 807 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 708 803 IPR009001 -
Sto9g1307 807 Pfam Elongation factor Tu C-terminal domain 728 802 IPR004160 -
Sto9g1307 807 PANTHER OS04G0595300 PROTEIN 646 805 - -
Sto9g1307 807 Gene3D Translation factors 706 807 - -
Sto9g1307 807 SUPERFAMILY L domain-like 299 506 - -
Sto9g1307 807 SUPERFAMILY L domain-like 59 338 - -
Sto9g1307 807 SUPERFAMILY Translation proteins 646 705 IPR009000 -
Sto9g1307 807 Pfam Leucine Rich Repeat 116 134 IPR011713 -
Sto9g1307 807 Gene3D Ribonuclease Inhibitor 62 199 IPR032675 -
Sto9g1307 807 Gene3D Ribonuclease Inhibitor 200 341 IPR032675 -
Sto9g1307 807 Gene3D Ribonuclease Inhibitor 347 521 IPR032675 -
Sto9g1307 807 PANTHER TRANSLATION FACTOR 646 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1307 Sto-Chr9 17383324 17391667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1307 646 805 Eukaryotic Initiation Factors Gene Family AT5G10630 62.722 7.75e-58 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1307 - - var:108321227 415.231