Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g1301 ATGCATTCGAGCGAGTTCGACGACGACGACGCCGCAGCTTTCGCCGGCGGTGGATTTATGCCGTCTCAGGCAACTCAGGGCCCAGACTCTTCCTTCTACTCCTCCAAGAATCGTGATGCTCAGGTATTGCTTCCTCTGACTATCAAGCAGATAAGTGATGCATTCCAGTCAAGCGATGATAAGTCTAATATGATTATTGATGGTGTGGACGTTACTAATGTTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGAAGGATTACTGATGTTGCTTTTGTTCTTGACGACGGGACTGGAAGGATTGAGTGTAATAAATGGCTTCAGGAAGCTGTAGACAGCATTGAAATGGAGGGTATCtcGGATGGAATGTATGTGCGTTTACATGGACACTTGAAAGGCTTTCAAGGCAAAATGACTGTAAATGTATTTTCTTTAAGGACAAGGGACGAGGGAGTCCCTCGTGAACTTATTGCACGACAGCTTGGAATTCCTTTGGATAAGCTAATGTTAGCTATTAAAAATCTTATAGAGGAAGGAGCTATCTATGAAGCTATAGGTTTGGGAAATAGTTATAGGCTGGGTTGGGTTCATGTCCGTGTTTTCTATTCGGTAAGCCAATGGGAAGCAAGACCCAAGATAGGCGTTCGACCATCTTACAGTGATTAG 666 0.4429 MHSSEFDDDDAAAFAGGGFMPSQATQGPDSSFYSSKNRDAQVLLPLTIKQISDAFQSSDDKSNMIIDGVDVTNVTLVGRVCNKAGRITDVAFVLDDGTGRIECNKWLQEAVDSIEMEGISDGMYVRLHGHLKGFQGKMTVNVFSLRTRDEGVPRELIARQLGIPLDKLMLAIKNLIEEGAIYEAIGLGNSYRLGWVHVRVFYSVSQWEARPKIGVRPSYSD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g1301 221 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 148 185 - -
Sto9g1301 221 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 147 - -
Sto9g1301 221 Pfam OB-fold nucleic acid binding domain 74 144 IPR004365 GO:0003676
Sto9g1301 221 SUPERFAMILY Nucleic acid-binding proteins 43 147 IPR012340 -
Sto9g1301 221 SUPERFAMILY "Winged helix" DNA-binding domain 140 185 IPR036390 -
Sto9g1301 221 CDD RPA2_DBD_D 73 146 - -
Sto9g1301 221 PANTHER REPLICATION PROTEIN A-RELATED 2 147 IPR040260 -
Sto9g1301 221 PANTHER REPLICATION PROTEIN A-RELATED 148 185 IPR040260 -
Sto9g1301 221 Pfam Replication protein A C terminal 141 185 IPR014892 -
Sto9g1301 221 Gene3D - 35 157 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g1301 Sto-Chr9 17331506 17334205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g1301 3 146 Core DNA Replication Machinery Family AT2G24490 53.793 9.87e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g1301 K10739 - gmx:100782819 222.631