Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto9g1094 | ATGCCAGAAAACCGGCAAGTTCAGAAGAATGCTACTCCTAATCAATCTGGTGATAACGTTGAAGAAGCCATTTGGCGTTTGAAAATCAATGATAGTCGGGACAGAAATGCTGTGGCTCAATCAACCCAATATCCGGATCGTCCTGGTGAACCTGACTGCTTGTACTATTTGAGGACCGGGTTGTGTGGTTATGGAAATAACTGTCAATATAATCACCCTGCTCATATTGCACTTGGTGCTCAGTATGCTGAAGAACTCCCTGAGAGAATTGGACAACCTGATTGCGGGTATTTTCTTAAGACAGGGACTTGTAAGTATGGATCAACATGTAAATATCATCACCCAAGAGACAGACGAGGTGCTGCTCCTGTATCTTTCAATGTTTTAGGTCTTCCCATGCGTCAGGAAGAGAAATCTTGTCCCTATTACATGCGGACTGGGTCTTGTAAGTTTGGAGTTGCTTGCAAGTTTCACCATCCACAGCCTGCCTCTTTTGGACCTGCCCCTACAGCTGGATCGCCTGGACCAACAGTTATGACATCATCTGGTTTACCATATGTTGGTGGGGTTCCTGCATGGTCATTACCAAGAATGTCATACTTATCTGGGCAGAGTCTTCAATCCTATGTTCCTGCTTTTCTGTCTTCTCCGCCAGGCATTATACCTACACCAAGCTGGAACAACTACATGgtttgttgttattgttgtttttctttttttgataagcATGGTTTGTTGTTTTTGTTGAATGCTTTGTTCCAGAGTATAAACATAAATTTGAGTGAGTCAATTCCTGATGAGCAGGTTAATTTATCATCAATGAATCCAACTCTTCCAGAAAGGCCTGATCAGCCAGAATGTCGATATTTTATGAGCACCGGCACTTGCAAATATGGATCTGATTGCAAGTACCACCATCCCAAAGAAAGAGTTGCCCAATCAACGATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAGGCTATTTGTTCTTATTACAGAACCTATGGAATATGCAAGTATGGCCCAACTTGCAAATTTGACCATCCTGTTTTAGCAATCCCTCAGAACTATGGCATGAACCCACCTGCTTTATCTGTACTTGACACATCCTTCATAAGTAATCCAACCAACTTGTCAACAATTCAACCATCCGAGACATCTCCGTCTAAATTATCGAGCGACAAGCATTCTGATACAAAATCTTCACCAGAAGATTCATCGAAACAAGCTGATATCACACAAAATTCCTTCCCGGCCTCCACTATACACAACGATGACGAAACTGATTGA | 1293 | 0.4184 | MPENRQVQKNATPNQSGDNVEEAIWRLKINDSRDRNAVAQSTQYPDRPGEPDCLYYLRTGLCGYGNNCQYNHPAHIALGAQYAEELPERIGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGAAPVSFNVLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQPASFGPAPTAGSPGPTVMTSSGLPYVGGVPAWSLPRMSYLSGQSLQSYVPAFLSSPPGIIPTPSWNNYMVCCYCCFSFFDKHGLLFLLNALFQSININLSESIPDEQVNLSSMNPTLPERPDQPECRYFMSTGTCKYGSDCKYHHPKERVAQSTINPLGLPVRPGQAICSYYRTYGICKYGPTCKFDHPVLAIPQNYGMNPPALSVLDTSFISNPTNLSTIQPSETSPSKLSSDKHSDTKSSPEDSSKQADITQNSFPASTIHNDDETD | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto9g1094 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 2 | 410 | - | - | |
| Sto9g1094 | 430 | SMART | c3hfinal6 | 281 | 308 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SMART | c3hfinal6 | 324 | 351 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SUPERFAMILY | CCCH zinc finger | 133 | 162 | IPR036855 | GO:0046872 | |
| Sto9g1094 | 430 | SUPERFAMILY | CCCH zinc finger | 284 | 310 | IPR036855 | GO:0046872 | |
| Sto9g1094 | 430 | MobiDBLite | consensus disorder prediction | 407 | 424 | - | - | |
| Sto9g1094 | 430 | Gene3D | - | 275 | 354 | - | - | |
| Sto9g1094 | 430 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Sto9g1094 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 324 | 352 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | SUPERFAMILY | CCCH zinc finger | 94 | 118 | IPR036855 | GO:0046872 | |
| Sto9g1094 | 430 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Sto9g1094 | 430 | Gene3D | - | 88 | 168 | - | - | |
| Sto9g1094 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | PANTHER | PROTEIN PHOSPHATASE RELATED | 2 | 410 | - | - | |
| Sto9g1094 | 430 | SUPERFAMILY | CCCH zinc finger | 52 | 74 | IPR036855 | GO:0046872 | |
| Sto9g1094 | 430 | MobiDBLite | consensus disorder prediction | 392 | 406 | - | - | |
| Sto9g1094 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 161 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 326 | 350 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 283 | 308 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 92 | 116 | IPR000571 | GO:0046872 | |
| Sto9g1094 | 430 | Gene3D | - | 9 | 83 | - | - | |
| Sto9g1094 | 430 | SUPERFAMILY | CCCH zinc finger | 323 | 350 | IPR036855 | GO:0046872 | |
| Sto9g1094 | 430 | MobiDBLite | consensus disorder prediction | 378 | 430 | - | - | |
| Sto9g1094 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 281 | 309 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto9g1094 | Sto-Chr9 | 14004376 | 14009579 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto9g1094 | 1 | 409 | C3H Transcription Factor Family | AT1G04990 | 45.519 | 3.43e-114 | 338 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Sto9g1094 | zf-CCCH | 4.5e-09 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto9g1094 | - | - | vra:106765262 | 616.69 |