Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0913 ATGTCGAATCCTAAGCGTCAGCGAGAGTACGATTCGCCCTTTGGGTACACTGTGAGTGTGAGTGCTGCTTCTGATGGGCAATCTTCAATCGGAACCACCAAGTCGTATCCGCCTCCGAACGCACTCTATGAGGACCTTGCTCAACGTTCCGACCTCTTCTGGGAAAACCTTCAGCATTTTCACAATTCCTTAGGCAGCAAATTCAAAGTTCCTACTATAGGAGGAAAGCCACTAGATCTATATCATCTTTTTATGGAAGTCACTTCTCGTGGTGGGCTTGAAAAGGTCATTGGAGATCGGAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAGATACTATAACCAGTGCATCATTTGTATTACGCAAATACTATCAATCTCTGCTTTATGACTTCGAGCAGGTTTATTATTTTCGGAAGCGAGCCCCTTCTTTTTCAATTCTtgATCCTGTTAACAATAGCTTAAAGGAAGGTACTTCTGTGAATGATTTACCAGGTCAGAATGATGTTGCAATGATCTCTGATGGTAGtagaatttatagcaatttgaATGCCTCTCCTAATCACCTTGAGGACAGAGGAATGAAGGTCTTCATGAGTGTTAAGCAGATAAACAGCCTTCATAATGACCATGTTATGCTCCATAATTGTAAGGAAAATCTTCTTAATTCTGATGCCTTGTCTGGTGCTCTTCATAGATTTCCAAACACAAATGACTGCTAA 726 0.405 MSNPKRQREYDSPFGYTVSVSAASDGQSSIGTTKSYPPPNALYEDLAQRSDLFWENLQHFHNSLGSKFKVPTIGGKPLDLYHLFMEVTSRGGLEKVIGDRKWKEVITVFKFPDTITSASFVLRKYYQSLLYDFEQVYYFRKRAPSFSILDPVNNSLKEGTSVNDLPGQNDVAMISDGSRIYSNLNASPNHLEDRGMKVFMSVKQINSLHNDHVMLHNCKENLLNSDALSGALHRFPNTNDC 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0913 241 Pfam ARID/BRIGHT DNA binding domain 51 134 IPR001606 GO:0003677
Sto9g0913 241 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 29 164 - -
Sto9g0913 241 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 29 164 - -
Sto9g0913 241 Gene3D - 39 146 IPR036431 GO:0003677
Sto9g0913 241 ProSiteProfiles ARID domain profile. 47 138 IPR001606 GO:0003677
Sto9g0913 241 SMART bright_3 48 139 IPR001606 GO:0003677
Sto9g0913 241 SUPERFAMILY ARID-like 45 142 IPR036431 GO:0003677
Sto9g0913 241 CDD ARID_HMGB9-like 50 134 IPR045303 GO:0003677
Sto9g0913 241 SMART ARID_2 44 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0913 Sto-Chr9 9430404 9434574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0913 41 156 ARID Transcription Factor Family AT3G13350 56.034 3.06e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto9g0913 ARID 7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0913 - - hbr:110632855 194.897