Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0753 ATGTTCAGTACAAGCTCCTTACCTTCTTACCCACCCAATGACGTCGTCGACCCCTCCccgctcctcacccactccctCTCCGACCACCTTCTCCGGCGGCCGACGCCGCCGCTGCGGAGCGCGGCGCGGTACTTCCGGCGCGCGAGCGGGCGGCGGATGATGCTGCGGGAGCCGTCGCTGCGGGTCCGGGAGAACGCGGCGGAGCAGCTGGAGGCGCGTCAGAGCCAGTGGGCGTTCTCGAAGACGGTGGTGATACTGGATGTCGTTTGGCATATGGCGTTTGTGGTGGTAGGGGTTGTCGTTTTGGGGATGAGCATGGAGGAGAAGCCTACGGCGCCCTTGAGGGCGTGGGTTTGTTGCTACTTGATTGAGGGCGTGTTTCACTGCGCGTGTGTGATTGTTAAGTACCGACGGCGCGTGGAGGCACGAGCGGCTTCTGCGTCGATGGAACAACAGGATGAGGATGCTGCGTGGCCAAGTGGTGGGAGCGATGTGGAGGAATCTGGCGTGGGACGATTACAAGAAACACATGGATGCAGGAAGCGAATGGAATCTCTAAATACCATGCTTGCATTTATATGGTGGCTTCTTGGATTCTACTGGTGGATTCATGCTCACATAACCCTGCCAAACCAACAACAATTCCTATTTATTGGTGTGTATGGGCCATCTGTCTTAAATGAACGTAACTCCCTCTGGGATTTCCTTAATAATGTTCGCCCAGGAAACTCTCCTTGGATAGTGATAGGGGACTTCAATCAAATAATCAATAATAGAGAAAAACTAAGCAAAAATCAGAAGATTCGAGGAAGCTCCCGCCTCGTTGATAGTATCAACTCTCTGGGTCTCATTGATCTCCCAACCACTGGGAACTGGTTTACTTGGACCAATGGGCGTCAAGGTGATGATCTCGTGTGGGAAAGGATTGATAAAACCTTCTCTAACACTAATTGGCTCCATTTATTCCCGGAAACTTGGGTTGAGGTCCTTCCTGTCGCTGCTTCTGGCCATTCCCCTCTAGTTATTCATGTTCAAAGAGCTCATCCGTCAAAGCAGTACTCCTTCAAATTTGAACTGATGTGGCTCCAACATCCTCAATTCCAGGAGATCATTCGTTCCAATTGGTTACCCACCAACTCAGGTTCCCGAGCTATGCAGGTGAATTCCAAGCTGAACAGCATTACCAAAAAAATTGCTCAATGGAATAAACATGAATTTGATCCAGCTCTCATTAAGGAGGCtgctaaaaagtattttatggATCTGTATTCCTCCAATAGCTCTATGAGCCCGGACCAAAGAAAAATTATTGTCAGCAATTCGGGCATCCCAATTTTGACTGAAGATCACATCCAACACCTCACTAAACCTTTCACCAAGTTTGAAATTGAGACTGCCTTATTCCAGATGAAAGGCTCTAAAGCTCCTAGCCCTGATGGTATGCCTCCTATTTTCTTTCAGCAGTTCTGGGACACAGTTGGCACTGATATTACTGGCATGGTGGCTTCTTTCTTAACTAGAGGTCATCTTCTTCGTACCTTTAATAGAACCAATGTGGTTCTCATCCCAAAGAAAGACAACCCTGCTTCCTTAAAGGACTATCGTCCCATCAGCCTCTGCAATACTTCCTACAAAATCATTGCCAAAACCTTAACTAATAGGCTCCAACCTATTATGAAGGATATTATTCTGCCTTTTCAGAATGCTTTTGTGAAAGACCGTTCAATTCATGACAATATTATCCTTGCCAAAGAGCTTCTACATTATATTAATGGTGGCAAAAACCGAAAGCAAGTCTGGGCAGCTCTCAAAGTTGATCTTCACAAGGCTTATGACAAAGTTACTTGGTTATTTCTGGAGGAAGTCCTGACTCATATGAACTTCCCTCCCCTGTGGAGAAGGATTATTATGGAATGTGTTACCACCTCTACTCTTCGCATCAGAATCAATGGGGATTACTCTGATTGGTTCCACCCCAAGGCAGGGCTTAGACAAGGTGACCCTTTATCCCCCTACCTATTTGTATTATGTACGAATGTTCTCTCCAGTTACCTTGTCCAAGCTGAGCACCTGAAGCACATTCAAGGTCCTAAAATCAGCAGACAAGCCCATCCTCTCAACCACCTAATGTATGCTGACGACCTCCTCATTTTCTTTAAAGCGAATCAGGAAACTTGTGCTAATGTGGACCTTCTGCTTAACATTTTTGGGCAAGCTTCGGGGCTCCttatgaataaagaaaaatctgAAATGAAATTTAGCCCAAACACTTCTGAGAATCAAAAAAATCTCTTCCTCTCTATCATCAATTGTAAGGGGCAGGATTACTTTGACAAATATTTGGGGGCCTTTATTGATGGTCCCAATCAGGACAGGCAAAATGCTGAACTTATCCTTGACCATCTTCAACAAAAACTTACTGGTTGGAAGGCCTCCATGTTGTCTCAAGCGGCCAGATTTACCCTTATCCAGGCGGTTCTGTCTGCTATCCCTCTTTATACTCTTCACTTTACTAGCTTGACAGATAATTATGCCAGGAAATGCAATTCCCTTATGAACAACTTCTTTTGGGGAAATTGGGGTGATGGGAAGACTACCCCTCTTATTGCTTGGGACAAGATTTGTAGGTCGAAAGCTGAGGGGGGTTTAGGTCTCAGAAGTATCCAAAGTTTGAATAAAGCCCTTTTGGAAAAACAGCTTTGTAGGATTATAACCTCGAACCAGGGGCTTATGAGTACTATCATGAGAGCCAAATATGTTGACCCTTTCCCCAATGGTAACCTTAAGTGCAGGCCTTATGACTCCCCTCTTTGGAAGAAGTTGTACAAGTGTAAGCACTTAGTCATGGACCACCTCAGATGGCGTGTGGGAGATGGTACTACCATTAGTCTATATGATCATTACTGGGTGCCTCCAGACTATCATACTCACCCCTTTACCAAAGTTAGTCAACTTATGTCTGGTGGGTTTTGGGACTCGGCCAAGCTCAGAAGAGTGTACCTCCCTCAGAAAATTAAGACCATCTCGAAAATAAACATCTCTTTCACCAACCAAAAGGATATCCTCATTTGGGGAAATAGTACTTCAGGAAAGTATGATCTCAAGGAAGCTTACCACATCAGTCGCCCTGAGCAAAGTGGCAGTCCTCTTCGCAATTGTGAGTGGCAGGGCATTTGGAAATTGAAATTTCCCTACAAAATTATTATGTTCTGGTGGAGAACCCTGCATAATGGTCTCCCATTAAGACAAAACTTAGCTAGACGAGGCTTTAGGATTGAGGACTCTTGTCCGTTTGGTTGTGATGAAAGTGAAACTGAGAGTCATTTGTTTAAGAATTGCCCCTTTGCTAAGTTGGTCTGGTTTGAGTCAAAGTTAATGATCCGTACTGAGAGCATCAACCAAAACTCTATTATTGATTGGATTGACTTCTGGATCCAGGATCAAGATACGAACAATGCTCATATCCGTAATTCTCTTATTCCGGAAGCTATTACGATTTGTTGGAGCATCTATACCCAGCGAAATCAAGTTTTGTTTCAGGATGGCAAAAGAGATCATAATGAAGTTCTTAATCGTGTGTCTCATGTCATGAAAAACATCCAACATGCGTTTGAGTTGCCTACCTTAGACCCGTTCTTTGCTCTTGATAGGCCACATCACCGTCCAACTCCGTACCATCCTCGTAATATTGCAAACTCCTCTTCCATTACTATCTTCTGCAGTTGGAGGAAGGATGCCTTGAGACTGACAAAGAGTGTCATCCTTTACACTTATCACAACTCTCATATCTATCCTCTCATTATGCTTGTGGTAAATATGAAGAACAATATGCTGACTTCAGTGGTTCAATGCTTGCGTACATGGATGCTCATGCCTCATGGATCTCACTTTAAAGCCGTTATATGCATCCCGAATCGTAACTTGATTAGTCAGCTTCATCAACGTTCTCTAGCTCCCCTAACTTATAGTATTATTATTGATGATATTGTCGCAATTAATTCCCCGTATGGGAACTTCACATTTACTTTCCTTCCCCAGGAAGGGGCATCCAAGGAAGAAATCAATCAGTTGCCAAAATACAGGTTCCAAAGGGTAGAAGGTGATGTTCAAGATTCTTCTTCCAAAGGAATAATGACAGAATGTGACAGTGATACACCTGCTCAACATCTTATTTCCATGGAAGATGCCAGCTCAGAGAACTTCCTTGCAACCACCATTTTCACATACACTGCATTGTTGCACATCAATGCCACCTGCCCTCTCTGCAAGTTCAACCTTCTCAATGCAAACCATCCTCCTCAACAAgaagtttaa 4314 0.44 MFSTSSLPSYPPNDVVDPSPLLTHSLSDHLLRRPTPPLRSAARYFRRASGRRMMLREPSLRVRENAAEQLEARQSQWAFSKTVVILDVVWHMAFVVVGVVVLGMSMEEKPTAPLRAWVCCYLIEGVFHCACVIVKYRRRVEARAASASMEQQDEDAAWPSGGSDVEESGVGRLQETHGCRKRMESLNTMLAFIWWLLGFYWWIHAHITLPNQQQFLFIGVYGPSVLNERNSLWDFLNNVRPGNSPWIVIGDFNQIINNREKLSKNQKIRGSSRLVDSINSLGLIDLPTTGNWFTWTNGRQGDDLVWERIDKTFSNTNWLHLFPETWVEVLPVAASGHSPLVIHVQRAHPSKQYSFKFELMWLQHPQFQEIIRSNWLPTNSGSRAMQVNSKLNSITKKIAQWNKHEFDPALIKEAAKKYFMDLYSSNSSMSPDQRKIIVSNSGIPILTEDHIQHLTKPFTKFEIETALFQMKGSKAPSPDGMPPIFFQQFWDTVGTDITGMVASFLTRGHLLRTFNRTNVVLIPKKDNPASLKDYRPISLCNTSYKIIAKTLTNRLQPIMKDIILPFQNAFVKDRSIHDNIILAKELLHYINGGKNRKQVWAALKVDLHKAYDKVTWLFLEEVLTHMNFPPLWRRIIMECVTTSTLRIRINGDYSDWFHPKAGLRQGDPLSPYLFVLCTNVLSSYLVQAEHLKHIQGPKISRQAHPLNHLMYADDLLIFFKANQETCANVDLLLNIFGQASGLLMNKEKSEMKFSPNTSENQKNLFLSIINCKGQDYFDKYLGAFIDGPNQDRQNAELILDHLQQKLTGWKASMLSQAARFTLIQAVLSAIPLYTLHFTSLTDNYARKCNSLMNNFFWGNWGDGKTTPLIAWDKICRSKAEGGLGLRSIQSLNKALLEKQLCRIITSNQGLMSTIMRAKYVDPFPNGNLKCRPYDSPLWKKLYKCKHLVMDHLRWRVGDGTTISLYDHYWVPPDYHTHPFTKVSQLMSGGFWDSAKLRRVYLPQKIKTISKINISFTNQKDILIWGNSTSGKYDLKEAYHISRPEQSGSPLRNCEWQGIWKLKFPYKIIMFWWRTLHNGLPLRQNLARRGFRIEDSCPFGCDESETESHLFKNCPFAKLVWFESKLMIRTESINQNSIIDWIDFWIQDQDTNNAHIRNSLIPEAITICWSIYTQRNQVLFQDGKRDHNEVLNRVSHVMKNIQHAFELPTLDPFFALDRPHHRPTPYHPRNIANSSSITIFCSWRKDALRLTKSVILYTYHNSHIYPLIMLVVNMKNNMLTSVVQCLRTWMLMPHGSHFKAVICIPNRNLISQLHQRSLAPLTYSIIIDDIVAINSPYGNFTFTFLPQEGASKEEINQLPKYRFQRVEGDVQDSSSKGIMTECDSDTPAQHLISMEDASSENFLATTIFTYTALLHINATCPLCKFNLLNANHPPQQEV 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0753 1437 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 522 752 IPR000477 -
Sto9g0753 1437 Gene3D Endonuclease/exonuclease/phosphatase 192 344 IPR036691 -
Sto9g0753 1437 PANTHER REVERSE TRANSCRIPTASES 366 1205 - -
Sto9g0753 1437 CDD RT_nLTR_like 516 785 - -
Sto9g0753 1437 Pfam zinc-binding in reverse transcriptase 1032 1120 IPR026960 -
Sto9g0753 1437 PANTHER - 366 1205 - -
Sto9g0753 1437 SUPERFAMILY DNase I-like 191 343 IPR036691 -
Sto9g0753 1437 SUPERFAMILY DNA/RNA polymerases 443 767 IPR043502 -
Sto9g0753 1437 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 503 785 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0753 Sto-Chr9 7339544 7348511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0753 19 217 C3H Transcription Factor Family AT1G68070 35.821 4.02e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0753 - - pdul:117630370 518.464