Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0709 CTGAAAATGCCGGCTGTTTACGGGGCTCGCTTGACCACCTTCGAAGATTCCGAGAAGGAGAGTGAATATGGCTACGTTCGCAAGGTATCAGGACCAGTCGTGGTTGCAGATGGCATGGCTGGGGCAGCTATGTATGAACTAGTGCGTGTGGGTCGTGACaacctcattggtgaaattattCGTCTTGAAGGGGATTCTGCTACTATCCAAGTTTATGAGGAAACAGCTGGTTTAATGGTGAATGATCCTGTTTTACGGACACACAAGCCTTTATCTGTGGAGTTGGGGCCTGGAATATTGGGAAATATTTTTGACGGAATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTCTATATTCCCCGTGGTGTGTCTGTTCCAGCACTTGACAAAGATACACTCTGGGAGTTTCAGCCTAAAAAAATTGGTGAAGGAGACCTATTAACTGGGGGAGATTTATATGCTACTGTTTTTGAAAACAGTCTAATGCAGCACCATGTTGCTCTTCCTCCTGATGCTATGGGAAAAATTACCTATATTGCACCACCTGGTCAATATTCCTTGAAGGATACTGTATTGGAGCTTGAGTTTCAAGGTGTCAAAAAGAAGTTCACCATGCTTCAAACTTGGCCTGTTCGTACACCACGACCTGTTGCATCAAAACTTGCTGCTGACACTCCTCTGCTCACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTCCTTGGTGGGACTTGTGCCATTCCTGGGGCTTTTGGTTGCGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGTATTCCAACTCTGATGCTGTTGTCTATGTTGGCTGTGGAGAACGTGGAAATGAAATGGCTGAGGTACTTATGGACTTTCCGCAACTTACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACAACCCTAGTGGCTAACACTTCAAACATGCCTGTGGCTGCTCGTGAGGCTTCCATTTATACAGGAATCACTTTGGCTGAGTATTTTAGAGATATGGGTTACAATGTCAGCATGATGGCAGATTCAACTTCTAGGTGGGCAGAAGCATTGCGTGAGATCTCTGGACGGCTGGCAGAAATGCCCGCAGATAGTGGATATCCTGCTTACCTAGCTGCACGTTTAGCTTCTTTCTATGAACGTGCTGGAAAAGTAAAATGTCTTGGAGGTCCTGAACGTACTGGTAGTGTCACAATTGTGGGTGCTGTTTCTCCACCTGGTGGAGATTTCTCAGATCCTGTGACATCTGCAACTCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGATAAAAAGCTTGCCCAGAGGAAGCATTTTCCTTCTGTAAACTGGCTTATTTCCTATTCCAAGTATTCTACGGCATTAGAATCCTTCTACGAGCAATTTGATCCTGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTTTTACAGAGAGAAGATGATCTGAATGAAATTGTCCAGCTGGTAGGCAAGGATGCTTTAGCTGAAGCAGATAAGATCACCTTGGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCACAGAATGCTTTTACTCCATATGACAAATTCTGTCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATCATTCATTTCTACAATTTGGCAAATCAGGCAGTGGAGAGGGGAGCTGGTTCAGATGGTCAAAAGATAACTTATACCCTCATTAAGCATCGCTTGGGAGATCTCTTCTACCGTTTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCAGCTCTGGTTGCCAAATTTAAGAAACTACATGAGGACCTGACTAATGGTTTCCGAAACCTTGATGATGAAACCCGATGA 1878 0.4393 LKMPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEADKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVAKFKKLHEDLTNGFRNLDDETR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0709 625 CDD ATP-synt_V_A-type_alpha_C 477 583 - -
Sto9g0709 625 Gene3D - 136 207 - -
Sto9g0709 625 Gene3D - 461 614 IPR024034 -
Sto9g0709 625 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 91 IPR036121 GO:0046034|GO:1902600
Sto9g0709 625 CDD ATP-synt_V_A-type_alpha_N 23 89 - -
Sto9g0709 625 CDD V_A-ATPase_A 90 462 - -
Sto9g0709 625 ProSitePatterns ATP synthase alpha and beta subunits signature. 451 460 IPR020003 GO:0005524
Sto9g0709 625 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 234 460 IPR000194 GO:0005524
Sto9g0709 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 464 IPR027417 -
Sto9g0709 625 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 22 613 IPR005725 GO:0033180|GO:0046961|GO:1902600
Sto9g0709 625 Gene3D - 22 91 IPR023366 -
Sto9g0709 625 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 5 624 - -
Sto9g0709 625 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 473 555 - -
Sto9g0709 625 Hamap V-type ATP synthase alpha chain [atpA]. 21 624 IPR022878 GO:0046034|GO:0046961
Sto9g0709 625 Gene3D - 93 459 IPR027417 -
Sto9g0709 625 Pfam ATPsynthase alpha/beta subunit N-term extension 104 225 IPR031686 -
Sto9g0709 625 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 87 IPR004100 GO:0046034|GO:1902600
Sto9g0709 625 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 5 624 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0709 Sto-Chr9 6922453 6931736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0709 3 625 Primary Pumps ATPases(2) AT1G78900 93.900 0.0 1210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0709 K02145 - gmx:100814929 1228