Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0691 ATGGGTAGAAAGAAAGTGACATTTGAGTACATCACTGATGATCATAAGAGAAAATTATCGTTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAACTCAGTATTCTTCGTGGTGTTGATGTTGTTGCCATTGTTTTCAATggctttaaatttttgaaatttggatATTAG 177 0.3277 MGRKKVTFEYITDDHKRKLSFKKRQEGLKKKARELSILRGVDVVAIVFNGFKFLKFGY 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0691 58 Gene3D - 13 56 IPR036879 GO:0003677|GO:0046983
Sto9g0691 58 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto9g0691 58 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto9g0691 58 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Sto9g0691 58 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Sto9g0691 58 PANTHER MADS BOX PROTEIN 3 52 - -
Sto9g0691 58 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sto9g0691 58 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 52 - -
Sto9g0691 58 SUPERFAMILY SRF-like 1 51 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0691 Sto-Chr9 6752071 6752247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0691 1 52 Type I MADS-box Gene Family AT1G22590 44.231 1.66e-11 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto9g0691 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0691 - K09264 egr:104414976 55.8398