Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0642 ATGAAGCTCACTGTTAAGACTCTGAAAGGAAGCCATTTCGAAATTAGGGTTCAGTCCTCCGACACTATAATGGCtgtcaaaaagaatatagaagatgtACAAGGAAAAGATAATTACCCTTGTGGACAGCAGTTACTTATCCACAATGGAAAGGTTTTGAAAGACGAAACTACACTAGCAGAGAACAAAGTCTCTGAAGATGGTTTTCTTGTGGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCTTCTGGCGCTTCATCTACTCAGCCTGCTAGCAATCCATCTACAACTGCATCAACTAAAAATTCTGCTCCTGTACCTGAACCTCCTGTACAAACTCAGGCTGCAACCAACAGTTCATCCACGACTGACGTCACAACAACGAATGTGACCACAGATACTTATGGTCAAGCTGCTTCAAATTTAGCTGTTGGTAGTAATCTTGAGCAGACCATTCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGAGACAGTTACTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATTCCTGAAGCAGCCGAAGTTGCCATACCAGTTGCTCATTACCCAGCTAGTCAAACAACTGAAACAGGTGGAGCTACTGCTGGAGCTGTTTCTGGAGCACCTAATTCATCTCCGTTAAACATGTTTCCACAGCTGAAACACTTCCAGGAGACAATTTctggtgatggagctgcacttGGGTCTCTAGACTTCCTTAGAAACAACCCCCAGTTTCGAGCATTGCGTACAATGGTGCAATCTAATCCACAAATTCTGCAGCCTGTGCTTCAAGAGCTTGGAAAGCAGAATCCTAATCTTTTAAGTCTAATTCAAGAGCATCATGCTGAGTTTCTCCAGTTAATAAATGAACCTGTGGAAAATTTTGAAGGTGACATATTTGACCAGCCTGAGCCAGAGATGCCTCATTCCATCAATGTGACACCTGCTGAGCAGGAGGCAATTCGAAGGCTAGAGGCAATGGGATTCGAAAGAGCCTCCGTCATAGAGGCATTTTTGGCATGTGACCGCGACGAGCAATTGGCAGCCAACTATTTATTGGAGAATTCTGGAGATTTTGAGGATTAA 1131 0.4226 MKLTVKTLKGSHFEIRVQSSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTSSSSGASSTQPASNPSTTASTKNSAPVPEPPVQTQAATNSSSTTDVTTTNVTTDTYGQAASNLAVGSNLEQTIQQIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEVAIPVAHYPASQTTETGGATAGAVSGAPNSSPLNMFPQLKHFQETISGDGAALGSLDFLRNNPQFRALRTMVQSNPQILQPVLQELGKQNPNLLSLIQEHHAEFLQLINEPVENFEGDIFDQPEPEMPHSINVTPAEQEAIRRLEAMGFERASVIEAFLACDRDEQLAANYLLENSGDFED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0642 376 SMART ubq_7 1 75 IPR000626 GO:0005515
Sto9g0642 376 Gene3D - 240 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto9g0642 376 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Sto9g0642 376 SUPERFAMILY UBA-like 314 373 IPR009060 GO:0005515
Sto9g0642 376 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Sto9g0642 376 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 375 - -
Sto9g0642 376 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Sto9g0642 376 SMART uba_6 332 369 IPR015940 -
Sto9g0642 376 SMART uba_6 148 188 IPR015940 -
Sto9g0642 376 Pfam UBA/TS-N domain 148 186 IPR015940 -
Sto9g0642 376 Pfam UBA/TS-N domain 332 367 IPR015940 -
Sto9g0642 376 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Sto9g0642 376 SUPERFAMILY XPC-binding domain 249 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto9g0642 376 CDD UBA1_Rad23_plant 142 191 - -
Sto9g0642 376 PRINTS DNA repair protein Rad23 signature 277 299 IPR004806 GO:0006289
Sto9g0642 376 PRINTS DNA repair protein Rad23 signature 326 342 IPR004806 GO:0006289
Sto9g0642 376 PRINTS DNA repair protein Rad23 signature 343 357 IPR004806 GO:0006289
Sto9g0642 376 PRINTS DNA repair protein Rad23 signature 358 373 IPR004806 GO:0006289
Sto9g0642 376 Gene3D - 323 371 - -
Sto9g0642 376 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Sto9g0642 376 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 330 370 IPR015940 -
Sto9g0642 376 SMART CBM 249 292 IPR006636 -
Sto9g0642 376 TIGRFAM rad23: UV excision repair protein Rad23 1 375 IPR004806 GO:0006289
Sto9g0642 376 Pfam XPC-binding domain 251 306 IPR015360 GO:0003684|GO:0006289|GO:0043161
Sto9g0642 376 Gene3D - 1 80 - -
Sto9g0642 376 Gene3D - 141 191 - -
Sto9g0642 376 MobiDBLite consensus disorder prediction 79 128 - -
Sto9g0642 376 CDD Ubl_Rad23 1 74 - -
Sto9g0642 376 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0642 Sto-Chr9 6269478 6275933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0642 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 4.75e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0642 K10839 - gmx:100804038 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0642 9 6269478 6275933 Sto1g0076 1 482324 491653 CCT