LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g0544	ATGGATAATGAGGAAATTCCATCAGTACCTTCAACACCTGCAACTCCAGGAACTCCTGGTGCTCCTCTCTTTGGAGGATTCAGGTCAGAAAGAACCGGAAATAATGGTGTTGGTAGGAAATCACTCCTCAAGAGTTGCAAGTGTTTCAGTGTTGAAGAATGGACCTTAGAAGATGGAGCCTTACCCAAAGTCTCTTGCTCATTGCCTCCTCCTCCTATCCCTCTTGCAAGAAAgATTGGAGCTGAGTTTATTGGCACTTTGATTCTCATGTTTGCTGGGACAGCCACTGCTATTGTGAACCAAAAGACAGAAGGCTCTGAGACTCTAATTGGATGTGCTGCCTCTACTGGTCTTGCAGTGATGATCGTCATCCTCTCCACTGGTCACATCTCTGGTGCTCATCTCAATCCTGCTGTCACCATTTCCTTTGCTGCACTAAAGCACTTTCCATGGAAACATGTGCCTATGTATATTGGAGCACAAGTCATGGCTTCTATATGTGCTGCTTTTGCATTGAAGGGGATATTTCATCCCTTCATGAGTGGAGGAGTCACAGTGCCTTCAGGAGGATATGGTCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTAACCTCATGTTTGTTGTCACTGCTGTGGCCACCGACACAAGAgctGTAGGGGAGCTTGCGGGAATCGCGGTGGGAGCGACTGTCATGCTCAATATCCTCATTGCTGGGCCAGCAACAGGAGCATCAATGAACCCTGTGAGAACACTAGGACCAGCCATTGCAGCAAATAACTACAAAGCCATATGGGTCTACCTCATAGCTCCTATACTTGGAGCTCTGGGTGGTGCAGGAATCTATACTGCAGTCAAGCTGCCTGAAGAAGATGGTGAGACTCAGGGAAAGGCTTCAACGCCTAGGAGCTTCAGAAGATGA	921	0.4691	MDNEEIPSVPSTPATPGTPGAPLFGGFRSERTGNNGVGRKSLLKSCKCFSVEEWTLEDGALPKVSCSLPPPPIPLARKIGAEFIGTLILMFAGTATAIVNQKTEGSETLIGCAASTGLAVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVMASICAAFALKGIFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKAIWVYLIAPILGALGGAGIYTAVKLPEEDGETQGKASTPRSFRR	306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g0544	306	PANTHER	BNAA02G36290D PROTEIN	3	297	-	-
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	77	96	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	116	140	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	153	172	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	197	215	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	228	250	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	PRINTS	Major intrinsic protein family signature	265	285	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	SUPERFAMILY	Aquaporin-like	74	291	IPR023271	-
	Sto9g0544	306	Gene3D	Glycerol uptake facilitator protein.	72	298	IPR023271	-
	Sto9g0544	306	MobiDBLite	consensus disorder prediction	1	32	-	-
	Sto9g0544	306	PANTHER	AQUAPORIN NIP2-1	3	297	IPR034294	-
	Sto9g0544	306	CDD	MIP	77	282	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	Pfam	Major intrinsic protein	76	282	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Sto9g0544	306	ProSitePatterns	MIP family signature.	134	142	IPR022357	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g0544	Sto-Chr9	5257646	5263530	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g0544	1	306	Major Intrinsic Protein MIP	AT1G80760	81.877	2.70e-177	490

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g0544	K09874		-	qsu:112009900	495.352

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto9g0544	9	5257646	5263530	Sto9g0544	9	5257646	5263530	ECH