Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0539 TTGAACTCCTCAGAATCTTCTTCTCATGAACTTGAGCCCCGGATTTTCTCATGCAACTACTGCCAGAGAAAATTCTATAGCTCGCAGGCGCTCGGAGGACACCAGAATGCGCACAAGCGCGAGAGGACTTTGGCGAAAAGAGGACATAATAAAGTTGGAGCTGCAGTTTCAGTAGAGTTTGGACAGAGGTACTCTAGTATGGCTTCCCTACCTTTGCATGGCTCATATAACAACAGATCACTTGGGATTCAAGCTCATTCTTTGATTCACAAGCCctcttatcatcatcatcaaccacCCATTATTGCTTTATCTCGTTCCAATGGTCAAAATGTGTGGTGGAGGCAGCCTATTGATCCACAACCTGCAATTGGGAAGCTTCCATCTGGGAAATTACATGGTGGGGATGAAACAACTAGTGAAGCATCCTTTTCTGGTGGAGTTCCAAGGTTAGGGAAGATCTCTTCAAAGATTGAGGGAATTGGAGGCTACTGGTTGGGAAGTGTTTCTCATGTAAAAACTAAACAAGAGGAGTTGAAGCAGAAGCTTGACTTGTCCCTTAAACTCTAA 570 0.4281 LNSSESSSHELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHNKVGAAVSVEFGQRYSSMASLPLHGSYNNRSLGIQAHSLIHKPSYHHHQPPIIALSRSNGQNVWWRQPIDPQPAIGKLPSGKLHGGDETTSEASFSGGVPRLGKISSKIEGIGGYWLGSVSHVKTKQEELKQKLDLSLKL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0539 189 MobiDBLite consensus disorder prediction 124 146 - -
Sto9g0539 189 PANTHER ZINC FINGER PROTEIN 1-LIKE 4 189 - -
Sto9g0539 189 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 189 IPR044246 GO:0009788
Sto9g0539 189 SUPERFAMILY beta-beta-alpha zinc fingers 13 43 IPR036236 -
Sto9g0539 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Sto9g0539 189 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Sto9g0539 189 Gene3D Classic Zinc Finger 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0539 Sto-Chr9 5189133 5189702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0539 12 189 C2H2 Transcription Factor Family AT1G80730 47.668 2.05e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto9g0539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0539 - - gmx:100812573 216.468