Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0530 aTGGCTAGACCCCAACAACGCTATCGAGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCAGAAGATGCAGCAAGAGCATACGACGAAGCAGCGAGGCTGATGTGTGGGACCAAAGCTCGAACCAATTTCCCATTCAATCCCAATGAGCCACAGCCATCTTCTTCAAAGTATCTCTCTGCAACATTAACAGCCAAGCTTCACAAGTGTCACATGGCGTCACTTTCTCTTCAAAtggctaataataataatactaatattaataataataataagcagAAATCACCACTACAAGAGCCtcaagaacaacaacaacaacacagCTCTAGGTTCAATTACCCATTTGCCCCCGTCAATAATGCCGCGGCGTCGGCCGGGACGAGCGCGGGCACAGGTTTCCGGTGGCTGGAGAATCGTTGGGTTGGGGAGGAAGGCCAAGGTGAAGAAGAAGTTGGGCAGCAAGTTCTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTCATTATGGCTCAATTGAGCTTTGTTCTGTTGGGTCATCTTATTAG 609 0.4516 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPFNPNEPQPSSSKYLSATLTAKLHKCHMASLSLQMANNNNTNINNNNKQKSPLQEPQEQQQQHSSRFNYPFAPVNNAAASAGTSAGTGFRWLENRWVGEEGQGEEEVGQQVLEDDHIEQMIQELLHYGSIELCSVGSSY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0530 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Sto9g0530 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Sto9g0530 202 PANTHER ETHYLENE RESPONSE FACTOR 1 197 - -
Sto9g0530 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sto9g0530 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
Sto9g0530 202 MobiDBLite consensus disorder prediction 100 128 - -
Sto9g0530 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sto9g0530 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Sto9g0530 202 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Sto9g0530 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto9g0530 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0530 Sto-Chr9 5077318 5078343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0530 1 198 AP2-EREBP Transcription Factor Family AT5G25190 57.576 2.31e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g0530 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0530 - - gmx:100527365 240.736