Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto9g0454 | ATGGCTAacatagaagaagaagatgattacGTGGAATATGTGCCCGTGGCCAAGCGCAGGGCCATGGAAGCTCAGAAGATTCTCCAGCGGAAAGGGAAGTCTTCTTCAGCAGTTGATGATGATTTGGAGAAATCGAGAGTGGCTGAAGCTAAACCCAGTCTTCTGGTTAAGGCGTCTCAATTGAAACGGGATCAACCTGAGATTAGTCCCACAGAGCAGATTGTTCAACAGGAAAAGGAGATGATTGAGAACTTGTCAGATCGAAAAACCCTAATGTCTGTTCGAGAATTGGCTAAGGGAATAACCTATGTGGAGCCTCTACGTACAGGATGGAAGCCACCTTTGCCCATTAGAAGAATGTCTAAAAAGGAATGTGATTTGATTCGGAAGCAGTGGCATATTATAGTTGATGGTGAAGACATCCCACCACCAATAAAGAATTTCAAAGATATGAGGTTTCCTGAGCCTGTTCTGAAGAAGTTGAAAGCTAAAGGGATTGTGCAACCGACACCGATTCAAGTGCAAGGTCTTCCGGTTATCTTATCTGGGAGAGACATGATTGGGATTGCATTCACAGGATCAGGCAAAACTCTGGTATTTGTGTTGCCAATGATCATGGTGGCATTGCAGGAGGAAATTATGATGCCTATTGTGCCAGGAGAAGGTCCATTTGGTTTGATTGTTTGTCCTTCAAGGGAACTGGCTAGGCAGACTTATGAAGTGGTCGAACAATTCTTGGTACCATTGAGAGAAGCTGGATATCCTGAGCTTAGGCCTTTGCTTTGTATTGGTGGAGTAGATATGAGATCACAGTTAGAGATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGATTAAAGGATATGTtagcaaagaaaaaaatgaacctTGATAATTGTAGATATCTAACGTTAGATGAAGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATAAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGGCAGACACTCTTATTTTCTGCCACTATGCCAACTAAAATTCAGAATTTTGCTAGGAGTGCTTTGGTGAAACCTGTTATTGTCAATGTGGGACGAGCAGGAGCTGCAAATCTTGATGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTACCTCCTTGAGTGCTTACAGAAAACTCCACCTCCTGTTCTAATATTTTGTGAGAACAAAGCAGATGTGGATGACATTCATGAATATCTTCTTTTGAAAGGAGTGGAAGCAGTGGCTATTCACGGAGGCAAAGATCaggaagagagagagtatgCCATTGCATCCTTTAAAAGTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGTTTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCAgctgaaattgaaaattatgtCCATAGGATTGGACGAACTGGAAGATGCGGTAAGACTGGCATAGCAACAACATTTATAAACAAGAATCAAAGTGAGACAACCTTACTTGATCTGAAGCACCTGTTGCAAGAAGCCAAACAGCGTATTCCTCCAGTTTTAGCAGAGTTGAATGATCCGATGGAAGATAATGAAGAAATTACTGACAAAAGTGGAGTTAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGTATTCGTGATTGTCCTAAACTAGAACATCAGAAGAGTATGGCGATTGCAAATAATAGAAGGGATTATTTTGGTTCGGGTGGTTACAGAGGAGAAATATGA | 1776 | 0.3986 | MANIEEEDDYVEYVPVAKRRAMEAQKILQRKGKSSSAVDDDLEKSRVAEAKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYVEPLRTGWKPPLPIRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLVPLREAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIASFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI | 591 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto9g0454 | 591 | Pfam | Helicase conserved C-terminal domain | 385 | 492 | IPR001650 | - | |
Sto9g0454 | 591 | ProSiteProfiles | Zinc finger CCHC-type profile. | 550 | 565 | IPR001878 | GO:0003676|GO:0008270 | |
Sto9g0454 | 591 | CDD | SF2_C_DEAD | 373 | 501 | - | - | |
Sto9g0454 | 591 | PANTHER | BNAA06G38640D PROTEIN | 11 | 571 | - | - | |
Sto9g0454 | 591 | Gene3D | - | 371 | 533 | IPR027417 | - | |
Sto9g0454 | 591 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 222 | 507 | IPR027417 | - | |
Sto9g0454 | 591 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 177 | 361 | IPR014001 | - | |
Sto9g0454 | 591 | SMART | c2hcfinal6 | 549 | 565 | IPR001878 | GO:0003676|GO:0008270 | |
Sto9g0454 | 591 | Pfam | DEAD/DEAH box helicase | 170 | 349 | IPR011545 | GO:0003676|GO:0005524 | |
Sto9g0454 | 591 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 372 | 532 | IPR001650 | - | |
Sto9g0454 | 591 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 11 | 571 | - | - | |
Sto9g0454 | 591 | SUPERFAMILY | Retrovirus zinc finger-like domains | 549 | 570 | IPR036875 | GO:0003676|GO:0008270 | |
Sto9g0454 | 591 | Pfam | Zinc knuckle | 549 | 565 | IPR001878 | GO:0003676|GO:0008270 | |
Sto9g0454 | 591 | CDD | DEADc_DDX41 | 157 | 362 | IPR044113 | GO:0000398|GO:0003724|GO:0005524 | |
Sto9g0454 | 591 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 146 | 174 | IPR014014 | GO:0003724 | |
Sto9g0454 | 591 | SMART | helicmild6 | 411 | 492 | IPR001650 | - | |
Sto9g0454 | 591 | SMART | ultradead3 | 165 | 376 | IPR014001 | - | |
Sto9g0454 | 591 | Coils | Coil | 503 | 523 | - | - | |
Sto9g0454 | 591 | Gene3D | - | 115 | 365 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto9g0454 | Sto-Chr9 | 4429220 | 4430995 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto9g0454 | 118 | 527 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 29.952 | 1.62e-56 | 194 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto9g0454 | K13116 | - | gmx:100814127 | 1126.31 |