Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0421 ATGGTCCAATCAAAGAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCACCCTTTATTGAAAAGGAGGGTATGGCTTGGGACATTTGAGAGTGCTGAGGATGCAGCTAGGGCATATGATGAAGCAGCCATTTTGATGAGTGGTAGAAATGCCAAAACCAACTTCCCAATCTCCAACAATAACATTAAAACTCAAATGGGAATtcatcattcttcttcttcttcttgttcttcgtCTTCGATTCTCCGAGCTAAGCTTCGCAAATCCTGCAAGTCATCCTCATCGTCCCCATCACCTTCTCTCACTTGCCTAAGGCTCGACACTCAGAATTCTCACATTGGAGTGTGGCACAAACGTGCAGGACATCATTCTGACGATTCGAATTGGGTTATGATGGTTCAGCTTCAACTCGAAAGCAGAAAgaacaataataacaacaacaacaataataacaataataatcttGAAGGCGCTGCTAATAACGATGAGTCAGCATTAATATTGCCTGCACCACACAAGCTCGAAGAACTTAATCATCAACCACAAAATGTCAATATCAATGGGTTAGAAGATGAAGAACAGAAAATTGCCTTGCAGATGATAGAAGAGCTTCTCAATACAAATTAG 651 0.384 MVQSKKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFESAEDAARAYDEAAILMSGRNAKTNFPISNNNIKTQMGIHHSSSSSCSSSSILRAKLRKSCKSSSSSPSPSLTCLRLDTQNSHIGVWHKRAGHHSDDSNWVMMVQLQLESRKNNNNNNNNNNNNNLEGAANNDESALILPAPHKLEELNHQPQNVNINGLEDEEQKIALQMIEELLNTN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0421 216 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sto9g0421 216 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sto9g0421 216 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 216 - -
Sto9g0421 216 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Sto9g0421 216 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Sto9g0421 216 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto9g0421 216 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sto9g0421 216 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Sto9g0421 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 216 - -
Sto9g0421 216 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0421 Sto-Chr9 4132765 4134159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0421 1 216 AP2-EREBP Transcription Factor Family AT1G15360 57.205 7.39e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g0421 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0421 - - gmx:100785898 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0421 9 4132765 4134159 Sto9g0421 9 4132765 4134159 ECH