Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0379 ATGGGTGGGACTTCGTTGGCGGGCTTGCAAGACCACATCAAATTGGCGAGAGAATACGCTCTTGAGGGACTCTATGATACCTCTATCATCTTCTTCGATGGTGCAGTTGCTCAGATCAATAAGCACCTAAGCACTGTTGATGATCCTTTAATTCGTTCGAAATGGATGAATGCTAAGAAAGCCATTTCTGAGGAGACGGAAGTTGTAAAGCAACTAGATGCAGAGAGACGGCCCCCTTCACCTCCTATATCTACTAAATCGTCATTTGTTTTTCAACCATTAGATGAGTATCCTACTTCGTCAAGTAATCCCATGGATGATCCTGATGTATGGAGGCCACCTAGTCGAGATAATACAAGTAGAAGACCCACAAGGCCTGGTCAAGTGGGTAGTCGGAAGTCACCACAAGGTACGACTGGGCGTGGTGCAAAGAGTGGTACTACAAGTAGGGTTAACTCGGGAGCCCGGGCATCAACCACAGGAAAGAAAGGCACTGGTTCCGGGAAGTCTAGCAAGACAGATTCAGATGGTAAATCGAAGAAGGGGCAATATGAGGGCCCTGATCCTGACCTCGCTGAGATGCTTGAAAGGGATGTGTTAGAAACGTCTCCTGGGGTGAGATGGGATGATGTTGCAGGTCTGACAGAAGCTAAAAGACTTCTAGAAGAAGCTGTTGTGCTCCCCTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTTTGATGTTTGGTCCTCCTGGAACTGGAAAGACACTGCTAGCTAAAGCAGTTGCTACTGAATGTGGGACTACCTTCTTCAATGTTTCATCTGCTACCTTAGCTTCAAAATGGCGTGGAGAGAGTGAACGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAGATTGATTCTCTATGTAACGCTAGAGGGGCATCTGGGGAGCATGAATCGTCTAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAACACTTCCACAAATGAAGATGGTAGTCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCATGGGACATTGATGAGGCACTAAGACGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGCCGCAAAGAGCTAATACGGATCAATTTGAAGACTGTAGAGGTAGCCCCTGATGTAAATATAGATGATGTGGCTCGCCGGACAGAAGGCTATAGTGGAGACGATCTGACGAATGTCTGTCGAGACGCTTCCTTGAATGGCATGAGGCGTAAGATAGCAGGGAAGACTCGAGACGAGATCAAGAACATGTCGAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGTGAAGGTCCAAAGAAGTGTTTCTCAGGCAGACATTGAACGTCATGAGAAGTGGTTTTCTGAATTTGGATCCGCTTGA 1482 0.4548 MGGTSLAGLQDHIKLAREYALEGLYDTSIIFFDGAVAQINKHLSTVDDPLIRSKWMNAKKAISEETEVVKQLDAERRPPSPPISTKSSFVFQPLDEYPTSSSNPMDDPDVWRPPSRDNTSRRPTRPGQVGSRKSPQGTTGRGAKSGTTSRVNSGARASTTGKKGTGSGKSSKTDSDGKSKKGQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFSEFGSA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0379 493 PANTHER AAA DOMAIN-CONTAINING 4 493 - -
Sto9g0379 493 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Sto9g0379 493 Pfam Vps4 C terminal oligomerisation domain 446 491 IPR015415 -
Sto9g0379 493 Gene3D - 3 77 - -
Sto9g0379 493 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 493 - -
Sto9g0379 493 Pfam AAA+ lid domain 404 445 IPR041569 -
Sto9g0379 493 SMART AAA_5 241 384 IPR003593 -
Sto9g0379 493 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 493 IPR028596 GO:0008017|GO:0008568|GO:0051013
Sto9g0379 493 Gene3D - 383 469 - -
Sto9g0379 493 CDD AAA 239 382 - -
Sto9g0379 493 MobiDBLite consensus disorder prediction 81 106 - -
Sto9g0379 493 MobiDBLite consensus disorder prediction 173 191 - -
Sto9g0379 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 490 IPR027417 -
Sto9g0379 493 MobiDBLite consensus disorder prediction 66 191 - -
Sto9g0379 493 Pfam ATPase family associated with various cellular activities (AAA) 245 382 IPR003959 GO:0005524|GO:0016887
Sto9g0379 493 MobiDBLite consensus disorder prediction 120 172 - -
Sto9g0379 493 Gene3D - 203 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0379 Sto-Chr9 3658773 3663024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0379 197 485 Calmodulin-binding Proteins AT3G56690 39.597 7.16e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0379 K07767 - tcc:18595849 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0379 9 3658773 3663024 Sto1g0210 1 1554112 1557679 CCT
Sto9g0379 9 3658773 3663024 Sto9g0379 9 3658773 3663024 ECH