Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto9g0363 | ATGCGTGAAGGTGTTTTTGACATCACTTTTAGGGTTTTCACACATGGGCGTTGGCCTTGGTCTGAGTTTAACGTCATGTCACAACCACCATCATCTAATAATTTTGACATCCAATTCACTCTAAGCATTCCCTACGAAGCTTCACATCAATACGATCTAACAGGTGACTTCATGACACACATTCACCAAGATCTTACTTACGATGAAATCCAAGAATTGGCCTCGGAGATTATGTCTAAATTTCAAGCTCTTCTTCGAGATCATTCCAGTAATCATCAATTTCCTCCTCTCATTGTGAACATTCATGTGTTTTCGGCTACTCCACCTACAAATTCGGATTTGTTGGAGGAGATCCTCGACGAACGAGTCGTAGAGGATTCGTTGGAGGAGATCGTCGTCGACCGAGTCGTGGAGGAATCGATGCAACAAGTGTATATGGTTCCGGCGACGGAGAAGGCTGTGGCGTCACTTGAGAAAGTCGAAGTGATCAGCGGCGAAGTTAAGGCGGCGGAAAGATGCAGTATTTGTATGGAAGATTTTGAAAAAGATGACGACGACATTTCAAGAATGCCTTATTTAGATATCATCGAAAGAGTCACAGAAGAATCCATGCAACATCGAAATACGGTTCCGGCAACGGAAAAAGCCATGGCATCACTGGAAAAAGTTAAGGTGTTTAATGGTGAAACATGCAGTAtttgtttagaaaattttgaagaagaagaggaagtttCGAGAATGCCGTGTCAGCATATTTACCATGAGAATTGTATTGTTGCGTGGTTGAAAACAAGTCATATGTGTCCATTGTGCCGCTTCAAAATGCTTATGACCTAA | 837 | 0.4098 | MREGVFDITFRVFTHGRWPWSEFNVMSQPPSSNNFDIQFTLSIPYEASHQYDLTGDFMTHIHQDLTYDEIQELASEIMSKFQALLRDHSSNHQFPPLIVNIHVFSATPPTNSDLLEEILDERVVEDSLEEIVVDRVVEESMQQVYMVPATEKAVASLEKVEVISGEVKAAERCSICMEDFEKDDDDISRMPYLDIIERVTEESMQHRNTVPATEKAMASLEKVKVFNGETCSICLENFEEEEEVSRMPCQHIYHENCIVAWLKTSHMCPLCRFKMLMT | 278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto9g0363 | 278 | PANTHER | F6A14.12 PROTEIN-RELATED | 195 | 275 | - | - | |
| Sto9g0363 | 278 | PANTHER | F6A14.12 PROTEIN-RELATED | 69 | 191 | - | - | |
| Sto9g0363 | 278 | CDD | RING-H2_PA-TM-RING | 230 | 272 | - | - | |
| Sto9g0363 | 278 | ProSiteProfiles | Zinc finger RING-type profile. | 231 | 272 | IPR001841 | - | |
| Sto9g0363 | 278 | Pfam | Ring finger domain | 230 | 272 | IPR001841 | - | |
| Sto9g0363 | 278 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 195 | 275 | - | - | |
| Sto9g0363 | 278 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 69 | 191 | - | - | |
| Sto9g0363 | 278 | SMART | ringv_2 | 230 | 272 | IPR011016 | GO:0008270 | |
| Sto9g0363 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 276 | IPR013083 | - | |
| Sto9g0363 | 278 | SMART | ring_2 | 231 | 271 | IPR001841 | - | |
| Sto9g0363 | 278 | SUPERFAMILY | RING/U-box | 219 | 276 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto9g0363 | Sto-Chr9 | 3468589 | 3472145 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto9g0363 | 203 | 276 | C3H Transcription Factor Family | AT3G58720 | 43.243 | 1.43e-16 | 75.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto9g0363 | - | K22378 | adu:110276959 | 99.7525 |