Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0313 TTGGAGTTGGACGTCGAGATTAGCAGCGAAAACTCCGGCGGGCTTGCCGGGAGATCATCGCGATCCGACGATGGTTTCGACGGTGAAGGAGAGCCCGATGGTGACGGTGATGGCGACggagacaaaaagaaaaagaaaaagaggaagaaactTCAAAGGCACACGGCTGAGCAGATCAGAGAAATGGAAGCGGTTTTCAAAGAGTCACCGCATCCTGATGAGAAGCAGAGGCAACAACTTAGCCAACAATTAGGCCTTGCTCCTACCCAAGTCAAGTTTTGGTTTCAAAATCGTCGAACACAAATTaagGCAATCCAAGAGCGTCATGAAAATTCATTGTTGAAGTCAGAAATGGATAAACttagagaagaaaataaagcgATGAGAGAGACCGTAACCAAAGCTTCTTGCCTTAACTGTGCCTGCACTGccattccttcttcttcttcacaacaTCAACTACTTCTTGAAAATGCCAAACTCAAAGCTGAgATAGAGAAGCTTGGAGCAGAACTAGGGAAGAAGACAACGTGGTCGTTGTTGTCATTATCGCCGTCGTCGTCGTCATCACCGACAACTACAAGTACATGCTACAGAGGCAAGAATATTATTATCGAAGAAAAAGATCAGGACGATgagaatgataataataataataataagaaaaatagaaaattctgGGATTTTGAGAAGAATGAAATGAATTGGGGAGGAgttgatgatgaggaggagaggaagagaatAATGGAGATGGTGAAAGAAGCAATGGAAGAGCTAAGAAAGATGGCTACTACGAATGAACCATTGTGGGTGCCTAGTGCTTCTGAAAGTGGTCGTCACCTTCTTAACTATGACGAATATGTGAAACacttctcatcatcatcatcactagaaaataatgatattaatattaatattaatgttagTGATATTGAAGCCTCTAGGGAAACTGGGGTTGTTTCTCTGGATCTCCCTCGTCTTCTTCAAATCTTCATGGATGTgAATGAATGGAGGGAAATGTTTGGATGCTTAATATCGAAGGCAGCAACTATTGATGTTATTTGCAGTGGTGAAGGAGCTAACAAGGATGGTGCCGTCCAATTGGTAATATGGGTAGAGCACTTAGAATGGGAGAAGAGGAGGAGAGTTGATACAATGTATCGCAGCATGGTCCACAGTGGTCTTCCCTTTGGGGCTAAGCATTGGCTTGCAACATTACAACTCCAATGTGAACGCCTTGTCTTCTTCATGGCTACTAATATTCCAATCAAGGATTCTACTGGTGTTGGGACAGTGGCTGGGAGGAAGAGCATATTGAAGTTGGGTGAGAGAATGACACAGAGTTTCTGCCAAGCCATTGGAGGTTCAAGCTTGCATTCATGGAGAAAGCTTAGAAGTGATGAGAATGGGGAGAACATAAGGATCAGCTCAAGGAACAACTTGAATGATCCTGGACACCCTCTTGGTTTGATCTTGTGTGCTGTTTGCTGTGTATGGCTTCCTGTTTCTCCAAACCTCCTCTTTCATTTCCTCAGGGACCAAGCTCGCAGAACTGAGTGGGACATGACAAGTGCTGGTGGGTCTGTGCAATCTATTGCAAACTTAGCCAAAGGAAAAGATAGAGGCAATGCAGTAACAATCCTGGCAGTAAAATCCCAAGACAAGAAAAGCATCAAGTGGATCCTGCAAGATAGCTGCACAAATGCTTATGAATCAATGGTAGTGTATGCTCCTGTGGACATCACTCCCATGCAGTCTGTGATCACAGGCTGTGACTCAAGCAACCTCCCCATTCTTCCCTCAGGATTCTCCATTCTCCCTGATGGAATCAGGCCATCTGTCATCACTTCAAAGCACCAAGAAAACACCaatggaggaggaggaagaggaggctCTTTGCTTGCCATGGCATTTCAGCTCCTTGCTAGCACTTCTCCCACTGCCAAGCTAACAAGGGAGTCTGTGGAATCAGTCAACACACTTATATCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAGGATTGTTAG 2037 0.3996 LELDVEISSENSGGLAGRSSRSDDGFDGEGEPDGDGDGDGDKKKKKKRKKLQRHTAEQIREMEAVFKESPHPDEKQRQQLSQQLGLAPTQVKFWFQNRRTQIKAIQERHENSLLKSEMDKLREENKAMRETVTKASCLNCACTAIPSSSSQHQLLLENAKLKAEIEKLGAELGKKTTWSLLSLSPSSSSSPTTTSTCYRGKNIIIEEKDQDDENDNNNNNKKNRKFWDFEKNEMNWGGVDDEEERKRIMEMVKEAMEELRKMATTNEPLWVPSASESGRHLLNYDEYVKHFSSSSSLENNDINININVSDIEASRETGVVSLDLPRLLQIFMDVNEWREMFGCLISKAATIDVICSGEGANKDGAVQLVIWVEHLEWEKRRRVDTMYRSMVHSGLPFGAKHWLATLQLQCERLVFFMATNIPIKDSTGVGTVAGRKSILKLGERMTQSFCQAIGGSSLHSWRKLRSDENGENIRISSRNNLNDPGHPLGLILCAVCCVWLPVSPNLLFHFLRDQARRTEWDMTSAGGSVQSIANLAKGKDRGNAVTILAVKSQDKKSIKWILQDSCTNAYESMVVYAPVDITPMQSVITGCDSSNLPILPSGFSILPDGIRPSVITSKHQENTNGGGGRGGSLLAMAFQLLASTSPTAKLTRESVESVNTLISCTLRNIRTSLQCEDC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0313 678 Coils Coil 104 138 - -
Sto9g0313 678 ProSiteProfiles START domain profile. 241 354 IPR002913 GO:0008289
Sto9g0313 678 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Sto9g0313 678 Pfam START domain 253 367 IPR002913 GO:0008289
Sto9g0313 678 Pfam START domain 369 412 IPR002913 GO:0008289
Sto9g0313 678 SMART HOX_1 47 109 IPR001356 GO:0003677
Sto9g0313 678 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 369 676 - -
Sto9g0313 678 Coils Coil 239 259 - -
Sto9g0313 678 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 369 676 IPR042160 -
Sto9g0313 678 Coils Coil 151 171 - -
Sto9g0313 678 CDD homeodomain 52 103 IPR001356 GO:0003677
Sto9g0313 678 SUPERFAMILY Homeodomain-like 36 106 IPR009057 -
Sto9g0313 678 Pfam Homeodomain 48 103 IPR001356 GO:0003677
Sto9g0313 678 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 4 369 - -
Sto9g0313 678 MobiDBLite consensus disorder prediction 1 58 - -
Sto9g0313 678 Gene3D - 36 118 - -
Sto9g0313 678 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Sto9g0313 678 MobiDBLite consensus disorder prediction 181 200 - -
Sto9g0313 678 SUPERFAMILY Bet v1-like 434 609 - -
Sto9g0313 678 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 369 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0313 Sto-Chr9 2933519 2947224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0313 7 678 Homeobox Transcription Factor Family AT1G79840 47.942 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto9g0313 START 1.4e-09 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0313 K09338 - ncol:116255420 582.408