Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0305 ATGTCTCCTCCACCATTAGAACATGATTACATAGGCTTATCAGAGAAGCCTCTCATGGAAATCTCTCataagttttcttcttcttcttcttcttctttgaacCTGAAGGAGACAGAGCTCAGACTTGGGCTTCCTGGCTGTGAATCTCCAGAGAGAAAATCTGCAAGTGGGGTTTCTCTATTTGGGAAGAATTTGCAGAATAATTTGAAGAACCTTATTGTGGCTGGATCTAAGAGAGGCTTTTGTGAAGCcattaatgatgatgatgatgttgatgTTGATGCTGCATCATCTCATCAAGTTGATTTGAGAAAAGGAGCTTCCTTTTTCTCTCCCATTGTTAGCcaaaaccaaaatattaataCCCACAAGAACAATTCTCAATCTGCAGAAGCAATCCAAGATTACAAAACTGAGGTTGCTTCAACAAAAGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAGAAACACATTAATGGCCTGCAATAATTTGACAAAGAACAATGAGGAAGAAGCAAAAAATTGTGGTGGTTGTTTGTATGTGAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGATTGATCTCAAAAACTACACCAATTATATGCAACTTTCTTCAGCTCTTGAGAAGATGTTCACTTGCTTCACCATTGATGGCTTAAGTGAGAGATCTTTGAGGGATCTTCTTCATGGCTCTGAGTATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTTGTGGGTGATGTCCCTTGGGACCATGGAAAAATCCAGGAGCCAAAACTAGTGCAGAAGAATCAAAAGGGagcattttga 831 0.3646 MSPPPLEHDYIGLSEKPLMEISHKFSSSSSSSLNLKETELRLGLPGCESPERKSASGVSLFGKNLQNNLKNLIVAGSKRGFCEAINDDDDVDVDAASSHQVDLRKGASFFSPIVSQNQNINTHKNNSQSAEAIQDYKTEVASTKAQVVGWPPIRSFRRNTLMACNNLTKNNEEEAKNCGGCLYVKVSMDGAPYLRKIDLKNYTNYMQLSSALEKMFTCFTIDGLSERSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWDHGKIQEPKLVQKNQKGAF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0305 276 PANTHER AUXIN-RESPONSIVE PROTEIN 6 258 - -
Sto9g0305 276 Gene3D - 176 273 - -
Sto9g0305 276 Pfam AUX/IAA family 37 258 IPR033389 -
Sto9g0305 276 SUPERFAMILY CAD & PB1 domains 177 258 - -
Sto9g0305 276 ProSiteProfiles PB1 domain profile. 181 271 IPR000270 GO:0005515
Sto9g0305 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 258 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0305 Sto-Chr9 2847102 2850323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0305 166 258 B3 DNA Binding Superfamily AT2G46530 33.333 1.83e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto9g0305 AUX_IAA 3.7e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0305 K14484 - gmx:100806699 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0305 9 2847102 2850323 Sto9g0305 9 2847102 2850323 ECH