Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0295 ATGGAGAAAAGACCACACAATTTTGACCTCAACGGCCACAAGAAAGATGAGAGATGTGGACTTGTGAAGAACACCACGTCCACTAAAAGGCCCAGGCCCAGGCCCATTAAGCACTCTCTTTCCGGTCCCGCGCACTATCACGGCGTCCGAATGCGAAGCTGGGGGAAGTGGGTGTCCGAGATTCGCGAGCCGCGCAAGAAGTCTCGAATCTGGCTCGGCACTTTTGCAACCCCTCAGATGGCGGCTCGAGCCCATGACGTCGCGGCTTTGGCCGTCAAGGGCAAGTCCGCCATTCTCAATTTTCCTCGGATTGCCGCGCTGCTCCCCCGCCCCGCCACGTGCGCCCCGCGTGACATCCAGGCCGCGGCTTCTGCGGCCGCCGCCATGGTGGAATTCGACAGTCACGAGATGGTGGAGTCGTTGTCCGAGTCGGAGTCGTCGGAGCTGAGTGAGATTGTGGAGTTGCCTAACATCGGAGAGGAGAGCTTTGACTCGGCCGAGTCGGGGGCTGAGTTCACGTGGATTGACTCGGTGGATAGTAATTGGGTGTTCCCGGGTATGGGTTCCGAGTCGGATGTCGTTGAATGGAGCTCCATTTTCTCTGAGAGTCTTCTCTGCAGTGCAGATTTTGTATAA 636 0.577 MEKRPHNFDLNGHKKDERCGLVKNTTSTKRPRPRPIKHSLSGPAHYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPQMAARAHDVAALAVKGKSAILNFPRIAALLPRPATCAPRDIQAAASAAAAMVEFDSHEMVESLSESESSELSEIVELPNIGEESFDSAESGAEFTWIDSVDSNWVFPGMGSESDVVEWSSIFSESLLCSADFV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0295 211 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Sto9g0295 211 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 186 - -
Sto9g0295 211 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Sto9g0295 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 186 - -
Sto9g0295 211 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Sto9g0295 211 MobiDBLite consensus disorder prediction 24 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0295 Sto-Chr9 2787285 2788900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0295 46 192 AP2-EREBP Transcription Factor Family AT5G11590 54.491 3.19e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g0295 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0295 K09286 - gmx:100801780 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0295 9 2787285 2788900 Sto9g0295 9 2787285 2788900 ECH