Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0288 atgtTAATGGAAATGCCGGAGTTCTTTGTCGGTGGCTATTTCGGCGCCGGAGGAGACCAATTCTCGCCGGGGAAGCGGCACGGCGGCGACCAGAAGACCGGCGAGCCATTCGCCATTGACGACCTGCTTGACTTCTCCAACGCAGATGCTATGATCATGTCCGACAGTTTCTTTGATAATGCCGCTGGAAACTCCGCCGAATCCTCCACTGTCACCGCCGTTGACAGCTGTAATTCCTCTGTTTCTGGCGGTGACAACCATTTCTCCGGCTATGTTGGCTTCGGAGATCCTCAATTCTCCGGTGAACTCTGTGTTCCGTACGACGATATGGCTCAGCTGGAATGGCTATCGAATTTCGTGGAAGATTCGTTCCCTGCAGAAGATGAGCTGAAGACATTGCACGTTCTCTCCGGCACCGCCGCTTCCGGCGGCATCGGTACGAAACCGCAGACGCCAGAGTCGTCCTCTTCCTCCGAAACGCTTCCACCATTTGCCGCTACCGACACCGCTCGAAACGCACCGTTTTTCCATCCGGAAATTCCGCTTCCGGGAAAAGCGCGGAGCAAGCGTTCACGCGCCGCACCCGGGGACTGGTCCACGCGCCTTCTCCACCTCGTCACGCCGACGACCGAACCGGTGCAACAGAAGTCTTCGTCGGCGGCGGTGCCGGCGACGGTGAAGAGGAGGGAGAGTTCGAATTCGGAGGGGCGAAAATGCCTGCACTGCGGCGCGGAGAAAACTCCGCAATGGCGGACTGGACCGATGGGCCCGAAGACGCTGTGCAATGCGTGCGGCGTGAGGTACAAGTCCGGGCGGTTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTTGTGTCGGCGAAGCACTCGAATTCGCATAGGAAGGTGATGGAGCTGAGAAGGCAGAAGGAGATGCAACGGCAGCAATTGCTGAGCCAGAGTTCAATTTTCGCGGCCGTCTCTCACGGCGGAGATGAGTATTTGATTCACCATCATGGTGGAGCAGATTATAGGCATATCATCTAG 1029 0.5792 MLMEMPEFFVGGYFGAGGDQFSPGKRHGGDQKTGEPFAIDDLLDFSNADAMIMSDSFFDNAAGNSAESSTVTAVDSCNSSVSGGDNHFSGYVGFGDPQFSGELCVPYDDMAQLEWLSNFVEDSFPAEDELKTLHVLSGTAASGGIGTKPQTPESSSSSETLPPFAATDTARNAPFFHPEIPLPGKARSKRSRAAPGDWSTRLLHLVTPTTEPVQQKSSSAAVPATVKRRESSNSEGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSAKHSNSHRKVMELRRQKEMQRQQLLSQSSIFAAVSHGGDEYLIHHHGGADYRHII 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0288 342 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Sto9g0288 342 MobiDBLite consensus disorder prediction 210 229 - -
Sto9g0288 342 MobiDBLite consensus disorder prediction 210 236 - -
Sto9g0288 342 PANTHER GATA TRANSCRIPTION FACTOR 9 1 342 - -
Sto9g0288 342 MobiDBLite consensus disorder prediction 174 197 - -
Sto9g0288 342 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Sto9g0288 342 MobiDBLite consensus disorder prediction 143 162 - -
Sto9g0288 342 MobiDBLite consensus disorder prediction 140 162 - -
Sto9g0288 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Sto9g0288 342 PANTHER GATA TRANSCRIPTION FACTOR 1 342 - -
Sto9g0288 342 Gene3D - 232 283 IPR013088 GO:0006355|GO:0008270
Sto9g0288 342 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Sto9g0288 342 PIRSF Txn_fac_GATA_plant 25 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto9g0288 342 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Sto9g0288 342 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0288 Sto-Chr9 2725203 2726356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0288 35 342 C2C2-Gata Transcription Factor Family AT4G32890 47.516 7.99e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto9g0288 GATA 4.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0288 - - gmx:100776605 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0288 9 2725203 2726356 Sto9g0288 9 2725203 2726356 ECH