Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0278 ATGCATATGTTTCAGGAGAGAAATCAAAGGCTGTTTTACAAACTTCTTATTGAGCATGTTGAGGAGTTACTTCCAGTTGTGTATACACCAACTGTTGGTGAAGCCTGCCAGAAGTACGGCAGCATCTTTATGCGTCCTCAGGGTCTTTATATCAGTTTGAAAGAAAAGGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGAGAGACATTCAAGTCATTGTCGTAACTGATGGAGAGAGAATCCTGGGTCTTGGAGATCTTGGCTGTCAGGGGATGGGAATACCAGTAGGAAAGCTTTCTTTGTATACAGCACTTGGAGGAGTTCGCCCTTCTGCTGAATATGCTGAACTTATGCACGAATTTATGACGGCAGTCAAACAAAATTATGGGGAAAAGGTCCTCATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGCAAAATATAGCTCAACTCATCTTGTATTTAATGACGACATACAAGGAACAGCATCAGTGGTCCTTGCTGGATTAGTTGCAGCTCTGAAAGTAGTTGGGGGAAACTTAGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACGTCAAAACAGACCAATGCCCCACTAGAAGAAGTGCGAAAGAACATTTGGTTGGTGGATTCAAAGGGATTGATTGTCAGTTCAAGAAAAGAATCActccaacatttcaaaaagcCCTGGGCTCATGAACATGAACCTGTTAAAAATCTTCTAGAAGCTGTGAAGAAAATTAAGCCAACAGTGTTAATTGGAACATCGGGACAAGGAAGAACTTTCACAAAAGAAGTTGTTGAGGCTATGGCTGCCATTAATGAGGTATAA 891 0.4097 MHMFQERNQRLFYKLLIEHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPERDIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSAEYAELMHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSTHLVFNDDIQGTASVVLAGLVAALKVVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKNLLEAVKKIKPTVLIGTSGQGRTFTKEVVEAMAAINEV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0278 296 PRINTS Malic enzyme signature 11 35 IPR001891 GO:0004470|GO:0004471
Sto9g0278 296 PRINTS Malic enzyme signature 71 100 IPR001891 GO:0004470|GO:0004471
Sto9g0278 296 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 4 163 IPR046346 -
Sto9g0278 296 Pfam Malic enzyme, NAD binding domain 164 295 IPR012302 GO:0051287
Sto9g0278 296 PIRSF ME 112 296 IPR001891 GO:0004470|GO:0004471
Sto9g0278 296 PIRSF ME 1 113 IPR001891 GO:0004470|GO:0004471
Sto9g0278 296 Gene3D - 114 161 IPR037062 GO:0004471
Sto9g0278 296 SMART Malic_M_2 164 296 IPR012302 GO:0051287
Sto9g0278 296 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 3 113 - -
Sto9g0278 296 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 113 295 - -
Sto9g0278 296 SMART malic_2 5 154 IPR012301 GO:0004471
Sto9g0278 296 ProSitePatterns Malic enzymes signature. 160 176 IPR015884 GO:0004471
Sto9g0278 296 Gene3D - 1 113 IPR037062 GO:0004471
Sto9g0278 296 Gene3D - 162 296 - -
Sto9g0278 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 295 IPR036291 -
Sto9g0278 296 PANTHER MALIC ENZYME-RELATED 3 113 - -
Sto9g0278 296 PANTHER MALIC ENZYME-RELATED 113 295 - -
Sto9g0278 296 Pfam Malic enzyme, N-terminal domain 5 112 IPR012301 GO:0004471
Sto9g0278 296 Pfam Malic enzyme, N-terminal domain 113 153 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0278 Sto-Chr9 2606765 2609033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0278 K00029 - gmx:100791514 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0278 9 2606765 2609033 Sto1g0302 1 2311187 2332917 CCT
Sto8g2048 8 13299991 13304710 Sto9g0278 9 2606765 2609033 ECH
Sto9g0278 9 2606765 2609033 Sto9g0278 9 2606765 2609033 ECH
Sto9g0278 9 2606765 2609033 Sto5g0664 5 4475413 4479707 ECH