Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0239 ATGGCCGCACCTCTCTCAAAGTTTTCATCTTCTGTGTATAATTGGAAGCTGCAGATGATGCTGGATCTGGAATTCagCTGGGATTCGTCACAAGCTATGGCCAATATTATGCCAATCTTGTGGAGCAGTAATGAAGAAGGGGGCTATAGCTATGGAAATAATATTGTTATGCAAGAGGATACGACGTCGTCGCACAAGCCGCCGCCAGCTGTCCCAATGGATAATTTCTACTCATCACCTAATTGTGATTTTGCTCCAAATAATATTATGCCTCAACCACAACAATTCATCCATGTCGGCGCTGCACAAGACGACTTCAAGTGTCACGTCGTCAACGCGTTTGACGACTCCCTGTCTCAGAGTACTTCCTCGTCATCGCAACCGTACATCGTCAACCAATGCGAGATTGCGGAATCCGGTGGCAGAGATAAGAGTATTCAGTGTCACGTCAACGGGACTGACGACTTCAACCAAGGTAAAAACAAAACAGTGGAATTACCTAAAAGGGGTAACTTCAGGGTGATTTCAGAGGATAATAACAGTAGCGGCAGCACTAATCCACAAAAATCCAAGAGACCCAGATTATTATGCTCGTCATCGTCAAACATAAATTTCCAAAATCCAAACTCGTCGTCGTCGACGTCGTCGTCGTACAATTGGAATTATTCGAGCGGCAACAACACAGATCAAGAGACAGATCCAGAGGCGATAGCGCAGATGAAGGAGATGATATACCGGGCCGCGGCATTCAGGCCCGTGAACTTGGGCCTGGATGTGGTGGAAAAGCCCAGGAGGAAAAACGTCAGGATCTCTAGCGACCCTCAGACGGTGGCTGCGAGACAGAGGAGGGAGAGAATAAGTgagaggattagggttttgcagAAGCTAGTGCCAGGTGGAAGCAAGATGGACACAGCATCAATGCTGGATGAGGCTGCAAATTATCTCAAGTTTCTTAGGTCACAGACTGTGAAGACTGAAGTGTACAACGATGCAGCTTTGTCCGCTTCCGAACCCGCCATCGTCTTCCTCCTTCGTCGTGTTAGGaatTATCTTCGTGGAGCATTCAAGCCAGCATGTAACATCTTAATCACATTTTCTGATGGGAAAAGTCGGAAGCAGgTTCCATTGAGAAAAGAGAATGGTCAAACTGTTATGGCTCCACTTTTCCAAAGTCAAGATAACGTAGCTGGGAAgATCACGATAGAACCAATGCAAGGGAAAAAGATTGATCACAGTGGCATAAAAGTTGAACTCCTTGGTCAGATAGAGATGTATTCTGACAGAGGAAATTATTATGACTTTACTTCCCTCGTACGAGAACTGGATGTTCCTGGAGAAATGTATGAGAAGAAAACATATCCATTTGAATTTTTCACTGTTGAAATGCCATATGAGATATACAATGGGTTAAATGTGAGGCTTAGGCAAATAGAATATCATAGGCATCCTATTTCACCATGTACAATTAGTGATCTTAAGTTTACGAGGGTTATCATTGTTCATACCATTATGGACGAGGCTTTTTTTGGGGGAATAGATATATCAGTTGTTCATTGGTATGTTTTGAAAGTGACCATCAATCGTGGTTATGCAGGAAGCATTATAAAGTACTGGGATTTTGTGGTTCTCAACTATTCTCCACCTCCATCAATTAACAATAGCATCAAGATGGAAGTGGGAATAGAAGATTGCCTACACATTGAATTTGAATACAACAAAAGCAAGTATCACCTGAAAGATGTCATCATTGGTAAGATATATTTTCTTCTTGTAAGAATCAAGTTAAAAAATATGGATCTTGAGATTAGGCGTCGAGAATCAACAGGATCGGGGACGAGTGCCCATGTCGAGACAGAAACATTGGCTAAATTTGAGTTGATGGATGGCACTCCTGTCAGAGCTCTGAAATTTAGGAATCAGCCTCATGAAACCTGTTTTCTGGCTGGTTCAATGCTCAACATTTATAATAATGCAAGTATACCTTGCTTTTGGCTTGCCATTGAAGCAAGTCCTCGAACTTGTGCTGGATCATCATTGATGTCTATGAAGGATGTGGCGACTCGTGTTCTACTTGAATACTCAGTATGGAATTCCTTTATCACTTTTGAACCGGGACAGCTTCGGGTTCGGGAGCATACCGTGTACGTCGAGCTAGTGATGGCGACACCACCGATGCCGCCGGCCGGAAACTCGTTGTTCGACGGAGGTCCGCCGGCGCCGCCACAACCTCCTGGAACGGATATGACTGGAATATCCTTTAGAGATCAGCTCTGGCTCAACACCTATCCTCTCGATCGCAACCTAGTCTTCGATTACTTCGCCTTGTCTCCTTTCTACGACTGGACCTGCAATAATGAACAGCTCCGGATGCGCTCTATTCACCCCCTTGATATATCTCAATTATCGAAAATGACAGGCACAGAGTATATGCTTAATGAAGTTATGGAGCCTCACCTTTTCATTATTCGCAAGCAAAAGAGAGATGGCCCAGAGAAAGTTACACCAATGCTGGCATATTACGTCTTGGATGGTTCAATATATCAGGCACCACAACTCTCCAATGTTTTTGCAGCTCGAATTGGAAGAGTACTGTATCACATACAAAGGGCTTTTACTACAGCTGCCTCAAAGTTAGAGAAGATAGGATATGTTGATTCTGAAAATGAGACTGCAGTTGTGGAATCCAAGGATGCCAAAGAGAAAATTGACTTCAAGGAAGTTAAGCGAGTGGATCACATTCTTGCATCCATACAGCGTAAGCTACCACCAGCCCCACCTCCACCACCATTTCCAGAAGGCTATATTCCGCCTGCTACTGCAGAAACTGAGAAAGGCCCTGAAACCCAGGAAGCAACAGAATCCCAAGCTCCTTCTGTTGATCCAATAATTGATCAAGGACCAGCTAAAAGATTGAAATGTTGA 2925 0.4359 MAAPLSKFSSSVYNWKLQMMLDLEFSWDSSQAMANIMPILWSSNEEGGYSYGNNIVMQEDTTSSHKPPPAVPMDNFYSSPNCDFAPNNIMPQPQQFIHVGAAQDDFKCHVVNAFDDSLSQSTSSSSQPYIVNQCEIAESGGRDKSIQCHVNGTDDFNQGKNKTVELPKRGNFRVISEDNNSSGSTNPQKSKRPRLLCSSSSNINFQNPNSSSSTSSSYNWNYSSGNNTDQETDPEAIAQMKEMIYRAAAFRPVNLGLDVVEKPRRKNVRISSDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQTVKTEVYNDAALSASEPAIVFLLRRVRNYLRGAFKPACNILITFSDGKSRKQVPLRKENGQTVMAPLFQSQDNVAGKITIEPMQGKKIDHSGIKVELLGQIEMYSDRGNYYDFTSLVRELDVPGEMYEKKTYPFEFFTVEMPYEIYNGLNVRLRQIEYHRHPISPCTISDLKFTRVIIVHTIMDEAFFGGIDISVVHWYVLKVTINRGYAGSIIKYWDFVVLNYSPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKLKNMDLEIRRRESTGSGTSAHVETETLAKFELMDGTPVRALKFRNQPHETCFLAGSMLNIYNNASIPCFWLAIEASPRTCAGSSLMSMKDVATRVLLEYSVWNSFITFEPGQLRVREHTVYVELVMATPPMPPAGNSLFDGGPPAPPQPPGTDMTGISFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDISQLSKMTGTEYMLNEVMEPHLFIIRKQKRDGPEKVTPMLAYYVLDGSIYQAPQLSNVFAARIGRVLYHIQRAFTTAASKLEKIGYVDSENETAVVESKDAKEKIDFKEVKRVDHILASIQRKLPPAPPPPPFPEGYIPPATAETEKGPETQEATESQAPSVDPIIDQGPAKRLKC 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0239 974 MobiDBLite consensus disorder prediction 168 231 - -
Sto9g0239 974 Pfam Helix-loop-helix DNA-binding domain 280 319 IPR011598 GO:0046983
Sto9g0239 974 SMART finulus 276 325 IPR011598 GO:0046983
Sto9g0239 974 MobiDBLite consensus disorder prediction 174 231 - -
Sto9g0239 974 PANTHER BNACNNG76240D PROTEIN 329 477 - -
Sto9g0239 974 PANTHER BNACNNG76240D PROTEIN 516 658 - -
Sto9g0239 974 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Sto9g0239 974 MobiDBLite consensus disorder prediction 921 936 - -
Sto9g0239 974 Gene3D - 549 638 IPR014752 -
Sto9g0239 974 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 516 658 IPR028934 GO:0006886
Sto9g0239 974 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 329 477 IPR028934 GO:0006886
Sto9g0239 974 Pfam MED6 mediator sub complex component 752 877 IPR007018 GO:0003712|GO:0006357|GO:0016592
Sto9g0239 974 Gene3D - 348 496 IPR014752 -
Sto9g0239 974 MobiDBLite consensus disorder prediction 919 974 - -
Sto9g0239 974 Gene3D - 275 331 IPR036638 GO:0046983
Sto9g0239 974 Gene3D Mediator complex, subunit Med6 746 875 IPR038566 -
Sto9g0239 974 Pfam Vacuolar protein sorting-associated protein 26 356 478 IPR028934 GO:0006886
Sto9g0239 974 Pfam Vacuolar protein sorting-associated protein 26 520 636 IPR028934 GO:0006886
Sto9g0239 974 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 325 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0239 Sto-Chr9 2181485 2198176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0239 168 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 62.346 7.35e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Sto9g0239 Med6 9.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0239 K18466 - gmx:100813307 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0239 9 2181485 2198176 Sto1g0349 1 2815399 2817105 CCT
Sto9g0239 9 2181485 2198176 Sto9g0239 9 2181485 2198176 ECH