Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0231 ATGGCCAATGTGTCAGGGCAGCTCGTGTGGGAGATCGTGAAGAGGAACAACTGCTTTTTGGTGAAGGAGTTTGGTAGGGGAACTCAAAGCGTGCAGTTCAGTAAAGAGAGCAACAATCTCTACAACCTCAACTCCTTCAAGCATTCTGGTTTGGCAAACAAGAAGACCGTTACTATTCAACCTGCTGGCAAAGATCAATCTGTGTTGCTGGGAACTACCAAGACAAAGAAGCAGAACAAGCCTGCCAATTTGCTTCACAAGTCTGTCATGAAAAAGGAGTTCCCAAGAATGGCAAAGGCCGTGATAAACCAGGTGGCAGATAACCACTACAGGCCTGATCTTAAGAAGGCAGCCCTTGCAAGGTTGAGTGCTGTTAATAGAAGCCTCAAAGTTGCAAAGTCTGGTGTGAAGAAGAGGAACAGACAGGCTGTGAAGGTCCCTGGTAGAAAGTGA 453 0.468 MANVSGQLVWEIVKRNNCFLVKEFGRGTQSVQFSKESNNLYNLNSFKHSGLANKKTVTIQPAGKDQSVLLGTTKTKKQNKPANLLHKSVMKKEFPRMAKAVINQVADNHYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVPGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0231 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Sto9g0231 150 Gene3D - 5 133 - -
Sto9g0231 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Sto9g0231 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0231 Sto-Chr9 2120676 2122630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0231 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 76.224 1.83e-78 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0231 K02903 - tcc:18588446 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0231 9 2120676 2122630 Sto1g0359 1 2882197 2883336 CCT
Sto9g0231 9 2120676 2122630 Sto1g0359 1 2882197 2883336 ECH
Sto9g0231 9 2120676 2122630 Sto9g0231 9 2120676 2122630 ECH